RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PI4K2BG5E9Z4 385 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 NR3C2P08235 984 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 E2F5Q15329 346 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 SNRNP35Q16560 246 aaKnown RBP16.81■□□□□ 0.28
CUX1-211ENST00000546411 FYB2Q5VWT5 728 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 WDR59Q6PJI9 974 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 TMEM139Q8IV31 216 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 MICALL2Q8IY33 904 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 CCDC197Q8NCU1 140 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 SMC6Q96SB8 1091 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 MXRA8Q9BRK3 442 aa16.81■□□□□ 0.28
CUX1-211ENST00000546411 EML1O00423 815 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 HSPA6P17066 643 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 ZNF571Q7Z3V5 609 aaPredicted RBP16.8■□□□□ 0.28
CUX1-211ENST00000546411 TRIM59Q8IWR1 403 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 SPATA20Q8TB22 786 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 MED15Q96RN5 788 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 HESX1Q9UBX0 185 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 ATRNO75882 1429 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 P4HA1P13674 534 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 SEC24CP53992 1094 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 IFRD2Q12894 506 aaPredicted RBP16.8■□□□□ 0.28
CUX1-211ENST00000546411 NBPF9Q3BBW0 867 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 BBS9Q3SYG4 887 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 NUGGCQ68CJ6 796 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 HAS1Q92839 578 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 THAP2Q9H0W7 228 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 PCSK1NQ9UHG2 260 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 MAGED2Q9UNF1 606 aaPredicted RBP16.8■□□□□ 0.28
CUX1-211ENST00000546411 SREBF1P36956 1147 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 SEZ6Q53EL9 994 aa16.8■□□□□ 0.28
CUX1-211ENST00000546411 PAPD7Q5XG87 772 aaKnown RBP16.8■□□□□ 0.28
CUX1-211ENST00000546411 MMTAG2Q9BU76 263 aaKnown RBP16.8■□□□□ 0.28
CUX1-211ENST00000546411 SOX10P56693 466 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 YWHAEP62258 255 aaKnown RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 FAM47CQ5HY64 1035 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 CDR2LQ86X02 465 aaPredicted RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 ANKRD36BP1Q96IX9 119 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 BTBD6Q96KE9 485 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 MTMR9Q96QG7 549 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 POP1Q99575 1024 aaKnown RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 FAM49AQ9H0Q0 323 aaPredicted RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 RBAKQ9NYW8 714 aaPredicted RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 USP20Q9Y2K6 914 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 ALG6Q9Y672 507 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 MMEP08473 750 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 ARL1P40616 181 aaPredicted RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 ITIH3Q06033 890 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 FAM47EQ6ZV65 393 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 ERICH1Q86X53 443 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 USP38Q8NB14 1042 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 ATP6V1G3Q96LB4 118 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 CNOT7Q9UIV1 285 aaKnown RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 AGO2Q9UKV8 859 aaKnown RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 EXOC1LA0A1B0GW35 172 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 GRID2IPA4D2P6 1211 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 PDE2AO00408 941 aaPredicted RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 DPEP1P16444 411 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 SCP2P22307 547 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 DPP9Q86TI2 863 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 RHPN2Q8IUC4 686 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 SRRM1Q8IYB3 904 aaKnown RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 HNRNPLLQ8WVV9 542 aaKnown RBP16.79■□□□□ 0.28
CUX1-211ENST00000546411 SEPT10Q9P0V9 454 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 ODF2LQ9ULJ1 636 aa16.79■□□□□ 0.28
CUX1-211ENST00000546411 A0A087WUV0 522 aaPredicted RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 FIGNQ5HY92 759 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 ANKRD20A3Q5VUR7 823 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 ZKSCAN4Q969J2 545 aaPredicted RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 ARL8AQ96BM9 186 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 OTUD5Q96G74 571 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 FAM163AQ96GL9 167 aaPredicted RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 NGRNQ9NPE2 291 aaKnown RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 PMS2P54278 862 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 OR6B2Q6IFH4 312 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 CEP128Q6ZU80 1094 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 DEFB132Q7Z7B7 95 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 CBWD2Q8IUF1 395 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 C4orf32Q8N8J7 132 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 CCDC110Q8TBZ0 833 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 IKZF4Q9H2S9 585 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 JPH1Q9HDC5 661 aaPredicted RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 NALCNQ8IZF0 1738 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 TLR3O15455 904 aaKnown RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 GNA15P30679 374 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 SLMAPQ14BN4 828 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 NPY5RQ15761 445 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 EFCAB13Q8IY85 973 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 TRIM11Q96F44 468 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 ZNF302Q9NR11 478 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 SLC9A2Q9UBY0 812 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 XRN1Q8IZH2 1706 aaKnown RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 SLC16A3O15427 465 aaKnown RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 GLI1P08151 1106 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 TM4SF1P30408 202 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 SFNP31947 248 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 MAPK6Q16659 721 aa16.78■□□□□ 0.28
CUX1-211ENST00000546411 HEXIM2Q96MH2 286 aaKnown RBP16.78■□□□□ 0.28
CUX1-211ENST00000546411 CNGA1P29973 690 aa16.77■□□□□ 0.28
CUX1-211ENST00000546411 NLRP7Q8WX94 980 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms