RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 CALML4Q96GE6 196 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 IFT74Q96LB3 600 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 USP28Q96RU2 1077 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 RUSC1Q9BVN2 902 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 CCSER1Q9C0I3 900 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 CCDC113Q9H0I3 377 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 CSRNP2Q9H175 543 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 C17orf75Q9HAS0 396 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 FBXO2Q9UK22 296 aaPredicted RBP13.13□□□□□ -0.31
YBX3-217ENST00000546164 PLAGL2Q9UPG8 496 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 SRPRBQ9Y5M8 271 aaKnown RBP13.13□□□□□ -0.31
YBX3-217ENST00000546164 BRWD1Q9NSI6 2320 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 CNTNAP2Q9UHC6 1331 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 NLRC5Q86WI3 1866 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 MYO7AQ13402 2215 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 A0A1B0GUA9 196 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 GRM6O15303 877 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 PLA2G4BP0C869 781 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 NCLP19338 710 aaKnown RBP13.12□□□□□ -0.31
YBX3-217ENST00000546164 EFNA5P52803 228 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 UBE3AQ05086 875 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 MAPK7Q13164 816 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 SLC39A14Q15043 492 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 ZRSR1Q15695 479 aaKnown RBP13.12□□□□□ -0.31
YBX3-217ENST00000546164 CCDC85BQ15834 202 aaPredicted RBP13.12□□□□□ -0.31
YBX3-217ENST00000546164 GLB1LQ6UWU2 654 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 MICALL1Q8N3F8 863 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 KLHL23Q8NBE8 558 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 DEPTORQ8TB45 409 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 SPPL3Q8TCT6 385 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 HELQQ8TDG4 1101 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 PPM1EQ8WY54 764 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 DRC1Q96MC2 740 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 PCDHB12Q9Y5F1 795 aa13.12□□□□□ -0.31
YBX3-217ENST00000546164 CARNS1A5YM72 827 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 MEIS3P2A8K0S8 358 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 ACKR2O00590 384 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 INPPL1O15357 1258 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 B4GALT5O43286 388 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 HIP1RO75146 1068 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 OFD1O75665 1012 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 ITGB1P05556 798 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 ZSCAN22P10073 491 aaPredicted RBP13.11□□□□□ -0.31
YBX3-217ENST00000546164 MARCKSP29966 332 aaPredicted RBP13.11□□□□□ -0.31
YBX3-217ENST00000546164 CAMK1Q14012 370 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 MAPK6Q16659 721 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 AGMOQ6ZNB7 445 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 COLGALT1Q8NBJ5 622 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 SMG8Q8ND04 991 aaKnown RBP13.11□□□□□ -0.31
YBX3-217ENST00000546164 LRRC15Q8TF66 581 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 ATXN2LQ8WWM7 1075 aaKnown RBP13.11□□□□□ -0.31
YBX3-217ENST00000546164 LPPQ93052 612 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 CPB2Q96IY4 423 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 ALG13Q9NP73 1137 aaKnown RBP13.11□□□□□ -0.31
YBX3-217ENST00000546164 UBN1Q9NPG3 1134 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 BLOC1S4Q9NUP1 217 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 THEGQ9P2T0 379 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 HCSTQ9UBK5 93 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 KCNG1Q9UIX4 513 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 COG5Q9UP83 839 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 IPPQ9Y573 584 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 PHLPP2Q6ZVD8 1323 aa13.11□□□□□ -0.31
YBX3-217ENST00000546164 ZMYM2Q9UBW7 1377 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 PRKCBP05771 671 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 PLCG1P19174 1290 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 PPM1AP35813 382 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 NPTX2P47972 431 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 PLCB3Q01970 1234 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 CEBPZQ03701 1054 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 DMP1Q13316 513 aaPredicted RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 COL19A1Q14993 1142 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 KARSQ15046 597 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 NOMO2Q5JPE7 1267 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 SPOUT1Q5T280 376 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 SLC27A1Q6PCB7 646 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 KCNT2Q6UVM3 1135 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 LINC00301Q8NCQ3 95 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 SPIRE2Q8WWL2 714 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 KCNN1Q92952 543 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 ZNF396Q96N95 335 aaPredicted RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 ZNF558Q96NG5 402 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 PLIN2Q99541 437 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 NTPCRQ9BSD7 190 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 KIFC3Q9BVG8 833 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 EIF2AQ9BY44 585 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 NSUN3Q9H649 340 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 RSAD1Q9HA92 442 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 POLD4Q9HCU8 107 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 PRDM6Q9NQX0 595 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 TBC1D13Q9NVG8 400 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 ARHGAP28Q9P2N2 729 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 KANSL3Q9P2N6 904 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 LZTS1Q9Y250 596 aa13.1□□□□□ -0.31
YBX3-217ENST00000546164 RBM19Q9Y4C8 960 aaKnown RBP13.1□□□□□ -0.31
YBX3-217ENST00000546164 N4BP3O15049 544 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 PPP6R2O75170 966 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 FGF18O76093 207 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 YEATS4O95619 227 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 F13A1P00488 732 aa13.09□□□□□ -0.31
YBX3-217ENST00000546164 SSBP05455 408 aaKnown RBP eCLIP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms