RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 MBTD1Q05BQ5 628 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 FAM187BQ17R55 369 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 NOMO2Q5JPE7 1267 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 CLLU1OSQ5K130 101 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 HYIQ5T013 277 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 PPP4R3CPQ6ZMV5 832 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 APBB1IPQ7Z5R6 666 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 HSCBQ8IWL3 235 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 HELQQ8TDG4 1101 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 PABPC5Q96DU9 382 aaKnown RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 DRC1Q96MC2 740 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 TRIM6Q9C030 488 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 CSRNP2Q9H175 543 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 ZSCAN16Q9H4T2 348 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 UBE2ZQ9H832 354 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 C17orf75Q9HAS0 396 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 ALG13Q9NP73 1137 aaKnown RBP13.07□□□□□ -0.32
HDAC4-216ENST00000544989 SPG21Q9NZD8 308 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 KCND2Q9NZV8 630 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 FAM50BQ9Y247 325 aa13.07□□□□□ -0.32
HDAC4-216ENST00000544989 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-216ENST00000544989 VWA3AA6NCI4 1184 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 RBAK-RBAKDNI3L0D1 243 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 LONP1P36776 959 aaKnown RBP13.06□□□□□ -0.32
HDAC4-216ENST00000544989 RNASELQ05823 741 aaKnown RBP13.06□□□□□ -0.32
HDAC4-216ENST00000544989 COL19A1Q14993 1142 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 MAPK6Q16659 721 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 TCEAL5Q5H9L2 206 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 SLC27A1Q6PCB7 646 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 KCNT2Q6UVM3 1135 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 DEPTORQ8TB45 409 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 POF1BQ8WVV4 589 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 CALML4Q96GE6 196 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 CDCA3Q99618 268 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-216ENST00000544989 RSAD1Q9HA92 442 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 NGRNQ9NPE2 291 aaKnown RBP13.06□□□□□ -0.32
HDAC4-216ENST00000544989 TLR9Q9NR96 1032 aa13.06□□□□□ -0.32
HDAC4-216ENST00000544989 A0A087WWV3 80 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 A0A1B0GUA9 196 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 N4BP3O15049 544 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 HSP90AA1P07900 732 aaKnown RBP13.05□□□□□ -0.32
HDAC4-216ENST00000544989 ITGA4P13612 1032 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 SYT1P21579 422 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 UBA7P41226 1012 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 DMP1Q13316 513 aaPredicted RBP13.05□□□□□ -0.32
HDAC4-216ENST00000544989 IL17AQ16552 155 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 ECM1Q16610 540 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 LEXMQ3ZCV2 418 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 MAEAQ7L5Y9 396 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 MICAL1Q8TDZ2 1067 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 ADAMTS19Q8TE59 1207 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 MRPS27Q92552 414 aaKnown RBP13.05□□□□□ -0.32
HDAC4-216ENST00000544989 FAM193BQ96PV7 902 aaPredicted RBP13.05□□□□□ -0.32
HDAC4-216ENST00000544989 ADPGKQ9BRR6 497 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 FZD8Q9H461 694 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 GPRC5CQ9NQ84 441 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 GIT1Q9Y2X7 761 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 RBM19Q9Y4C8 960 aaKnown RBP13.05□□□□□ -0.32
HDAC4-216ENST00000544989 BRWD1Q9NSI6 2320 aa13.05□□□□□ -0.32
HDAC4-216ENST00000544989 TCF20Q9UGU0 1960 aaKnown RBP13.04□□□□□ -0.32
HDAC4-216ENST00000544989 ACKR2O00590 384 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 INPPL1O15357 1258 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 STX6O43752 255 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 OFD1O75665 1012 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 SRGAP2BP0DMP2 458 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 ARF4P18085 180 aaPredicted RBP13.04□□□□□ -0.32
HDAC4-216ENST00000544989 SCP2P22307 547 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 GUCY2CP25092 1073 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 PRPF4BQ13523 1007 aaKnown RBP13.04□□□□□ -0.32
HDAC4-216ENST00000544989 SF3A1Q15459 793 aaKnown RBP13.04□□□□□ -0.32
HDAC4-216ENST00000544989 AMHR2Q16671 573 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 TMEM132AQ24JP5 1023 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 UBXN11Q5T124 520 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 LRRC55Q6ZSA7 311 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 CABP7Q86V35 215 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 LPPQ93052 612 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 TMEM169Q96HH4 297 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 TMEM175Q9BSA9 504 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 MMTAG2Q9BU76 263 aaKnown RBP13.04□□□□□ -0.32
HDAC4-216ENST00000544989 C1QTNF1Q9BXJ1 281 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 TBC1D13Q9NVG8 400 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 IPPQ9Y573 584 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 MORC2Q9Y6X9 1032 aaPredicted RBP13.04□□□□□ -0.32
HDAC4-216ENST00000544989 MYO7AQ13402 2215 aa13.04□□□□□ -0.32
HDAC4-216ENST00000544989 WDFY4Q6ZS81 3184 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 PP2D1A8MPX8 630 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 E9PMD0 336 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 H0YCG3 227 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 ZC3H11AO75152 810 aaKnown RBP eCLIP13.03□□□□□ -0.32
HDAC4-216ENST00000544989 NR1I2O75469 434 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 PRKCBP05771 671 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 BMP1P13497 986 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 KCNA5P22460 613 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 CDC25AP30304 524 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 SMTNP53814 917 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 BCAR1P56945 870 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 TFF2Q03403 129 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 CAMK1Q14012 370 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 GIT2Q14161 759 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 ZRSR1Q15695 479 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms