RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ADGRA3Q8IWK6 1321 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 SUPT20HL2P0C7V6 817 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 PRKCEQ02156 737 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 ARHGEF19Q8IW93 802 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 TMEM117Q9H0C3 514 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 KMT5AQ9NQR1 393 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 CYP26B1Q9NR63 512 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 EIF3JO75822 258 aaKnown RBP14.95□□□□□ -0.02
RTN3-210ENST00000540798 TNFRSF8P28908 595 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 CNGA1P29973 690 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 PAFAH1B1P43034 410 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 MIS18BP1Q6P0N0 1132 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 RIOX2Q8IUF8 465 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 MFSD14AQ96MC6 490 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 PSMB7Q99436 277 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 LRRC1Q9BTT6 524 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 ADARB2Q9NS39 739 aaKnown RBP14.95□□□□□ -0.02
RTN3-210ENST00000540798 SMARCAL1Q9NZC9 954 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 COQ4Q9Y3A0 265 aa14.95□□□□□ -0.02
RTN3-210ENST00000540798 MAFBQ9Y5Q3 323 aaPredicted RBP14.95□□□□□ -0.02
RTN3-210ENST00000540798 SYNGAP1Q96PV0 1343 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 IGKV6D-21A0A0A0MT36 114 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 DENND3A2RUS2 1198 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 TMEM253P0C7T8 217 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 EDNRBP24530 442 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 CETN1Q12798 172 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 SNRNP35Q16560 246 aaKnown RBP14.94□□□□□ -0.02
RTN3-210ENST00000540798 MAP9Q49MG5 647 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 GLE1Q53GS7 698 aaKnown RBP14.94□□□□□ -0.02
RTN3-210ENST00000540798 CCDC181Q5TID7 509 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 U2AF1L4Q8WU68 220 aaKnown RBP14.94□□□□□ -0.02
RTN3-210ENST00000540798 FOXN3O00409 490 aaPredicted RBP14.94□□□□□ -0.02
RTN3-210ENST00000540798 GCLMP48507 274 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 GALCP54803 685 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 STXBP2Q15833 593 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 XKR3Q5GH77 459 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 TAS1R3Q7RTX0 852 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 DNAAF5Q86Y56 855 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 GLYCTKQ8IVS8 523 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 TMC2Q8TDI7 906 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 MS4A14Q96JA4 679 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 KIFC3Q9BVG8 833 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 RBM12Q9NTZ6 932 aaKnown RBP14.94□□□□□ -0.02
RTN3-210ENST00000540798 RNF216Q9NWF9 866 aaPredicted RBP14.94□□□□□ -0.02
RTN3-210ENST00000540798 BTBD7Q9P203 1132 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 ARHGAP28Q9P2N2 729 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 TMEM59LQ9UK28 342 aa14.94□□□□□ -0.02
RTN3-210ENST00000540798 CCDC169A6NNP5 214 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 LRRIQ3A6PVS8 624 aaPredicted RBP14.93□□□□□ -0.02
RTN3-210ENST00000540798 H3BQF6 201 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 KIF4AO95239 1232 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 ATP4AP20648 1035 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 OAS2P29728 719 aaKnown RBP14.93□□□□□ -0.02
RTN3-210ENST00000540798 ABCD1P33897 745 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 TCEAL1Q15170 157 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 CBWD2Q8IUF1 395 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 PARD3BQ8TEW8 1205 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 AENQ8WTP8 325 aaKnown RBP14.93□□□□□ -0.02
RTN3-210ENST00000540798 CEP89Q96ST8 783 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 ATP6V0A4Q9HBG4 840 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 FBXO40Q9UH90 709 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 ZNFX1Q9P2E3 1918 aaKnown RBP14.93□□□□□ -0.02
RTN3-210ENST00000540798 MYCNP04198 464 aaPredicted RBP14.93□□□□□ -0.02
RTN3-210ENST00000540798 MYBL2P10244 700 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 MXI1P50539 228 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 ALDH5A1P51649 535 aaPredicted RBP14.93□□□□□ -0.02
RTN3-210ENST00000540798 SOX10P56693 466 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 CCDC70Q6NSX1 233 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.93□□□□□ -0.02
RTN3-210ENST00000540798 UTRNP46939 3433 aa14.93□□□□□ -0.02
RTN3-210ENST00000540798 LRRN2O75325 713 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 GARTP22102 1010 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 GTF2H1P32780 548 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 FSTL1Q12841 308 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 PROCA1Q8NCQ7 364 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 HDAC7Q8WUI4 952 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 UBE2TQ9NPD8 197 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 SEPT9Q9UHD8 586 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 PACSIN2Q9UNF0 486 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 ZC3H4Q9UPT8 1303 aaKnown RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 A0A0G2JLL6 359 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 IRF6O14896 467 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 CAPN2P17655 700 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 SCP2P22307 547 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 CNTN2Q02246 1040 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 PPATQ06203 517 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 PRKG1Q13976 671 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 BRDTQ58F21 947 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 PRRT2Q7Z6L0 340 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 LMBR1Q8WVP7 490 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 PBKQ96KB5 322 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 AGPAT1Q99943 283 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 SUCLA2Q9P2R7 463 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 DMGDHQ9UI17 866 aaKnown RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 DDNO94850 711 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 AARSP49588 968 aaKnown RBP eCLIP14.92□□□□□ -0.02
RTN3-210ENST00000540798 GPC3P51654 580 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 HADHBP55084 474 aaKnown RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 RPS6KA1Q15418 735 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 ARHGAP44Q17R89 818 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms