RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 BORCS6Q96GS4 357 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 CCDC77Q9BR77 488 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 MYLK2Q9H1R3 596 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 TAS2R14Q9NYV8 317 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 C2CD2Q9Y426 696 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 ANKRD63C9JTQ0 380 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 RASA1P20936 1047 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 RAB27AP51159 221 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 MKRN3Q13064 507 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 TMED2Q15363 201 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 ZRSR2Q15696 482 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 AGGF1Q8N302 714 aaeCLIP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 MRRFQ96E11 262 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 SCOCQ9UIL1 159 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 A6NHS1 94 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 OAS1P00973 400 aaKnown RBP13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 ZBTB48P10074 688 aaPredicted RBP13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 RFC5P40937 340 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 RASSF2P50749 326 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 USP4Q13107 963 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 DNAJC3Q13217 504 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 MEX3CQ5U5Q3 659 aaKnown RBP13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 ZNF746Q6NUN9 644 aaPredicted RBP13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 TTC27Q6P3X3 843 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 TRMT10CQ7L0Y3 403 aaKnown RBP13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 FAM186BQ8IYM0 893 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 SERPINB12Q96P63 405 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.77□□□□□ -0.22e-7■■■■■ 90.4
SFSWAP-209ENST00000540469 DNM3Q9UQ16 869 aa13.77□□□□□ -0.2
SFSWAP-209ENST00000540469 MIF4GDA9UHW6 222 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 MAPK13O15264 365 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 TTLL1O95922 423 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 MFN1Q8IWA4 741 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 RDH13Q8NBN7 331 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 CELF1Q92879 486 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 CEP95Q96GE4 821 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 ANKRD27Q96NW4 1050 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 POP1Q99575 1024 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 CYP39A1Q9NYL5 469 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 SPAG7O75391 227 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 DLATP10515 647 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 VCAM1P19320 739 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 EPHB2P29323 1055 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 RPS6KA3P51812 740 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 ROR2Q01974 943 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 CYP4A11Q02928 519 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 CWF19L1Q69YN2 538 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 VSTM1Q6UX27 236 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 PPP1R21Q6ZMI0 780 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 ZC3H18Q86VM9 953 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 RHOT2Q8IXI1 618 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 LRRC8CQ8TDW0 803 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 C1orf54Q8WWF1 131 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 DHX36Q9H2U1 1008 aaKnown RBP13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.77□□□□□ -0.215e-6■□□□□ 9.7
SFSWAP-209ENST00000540469 BCS1LQ9Y276 419 aa13.77□□□□□ -0.21
SFSWAP-209ENST00000540469 ANKRD62A6NC57 917 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 SFI1A8K8P3 1242 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 RASA4BC9J798 803 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 RASA4O43374 803 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ATP5HO75947 161 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ATP6V1C1P21283 382 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 COILP38432 576 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 PTGIRP43119 386 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 PTDSS1P48651 473 aaKnown RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 PEX5P50542 639 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 CYP2J2P51589 502 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 RCN2Q14257 317 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 RRP1BQ14684 758 aaKnown RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ASRGL1Q7L266 308 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 EPM2AIP1Q7L775 607 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 SLC35C1Q96A29 364 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 PIDD1Q9HB75 910 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 BSDC1Q9NW68 430 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 TRPM3Q9HCF6 1732 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ENTPD5O75356 428 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 FTLP02792 175 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 COMTP21964 271 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 HSPA1LP34931 641 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 CDK8P49336 464 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 KRT17Q04695 432 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ERFEQ4G0M1 354 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 MFSD5Q6N075 450 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 CYP4F22Q6NT55 531 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 RNF207Q6ZRF8 634 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 APBB1IPQ7Z5R6 666 aaPredicted RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 TTC8Q8TAM2 541 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 GRAMD1AQ96CP6 724 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 TMEM109Q9BVC6 243 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 TUBP50607 506 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 SEPT7Q16181 437 aaKnown RBP13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 SGO2Q562F6 1265 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 FAM13CQ8NE31 585 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ERMNQ8TAM6 284 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 HAS1Q92839 578 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 MAGEB18Q96M61 343 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 REEP2Q9BRK0 252 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 CCDC87Q9NVE4 849 aa13.76□□□□□ -0.21
SFSWAP-209ENST00000540469 ESYT2A0FGR8 921 aa13.75□□□□□ -0.21
SFSWAP-209ENST00000540469 NVLO15381 856 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms