RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 STK36Q9NRP7 1315 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 ST18O60284 1047 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 ALDH2P05091 517 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 HOXA11P31270 313 aaPredicted RBP13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 STK3Q13188 491 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 LONRF3Q496Y0 759 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 OTUD6AQ7L8S5 288 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 CABP7Q86V35 215 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 ZNF280BQ86YH2 543 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 C12orf76Q8N812 135 aaPredicted RBP13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 PRPF31Q8WWY3 499 aaKnown RBP13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 FAM193BQ96PV7 902 aaPredicted RBP13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 VN1R3Q9BXE9 311 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 GBP3Q9H0R5 595 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 SLKQ9H2G2 1235 aaPredicted RBP13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 UBN1Q9NPG3 1134 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 PDRG1Q9NUG6 133 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 WRAP73Q9P2S5 460 aaPredicted RBP13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 KCNJ14Q9UNX9 436 aa13.42□□□□□ -0.26
CBX3P4-202ENST00000540428 GALR2O43603 387 aaPredicted RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 CCNT1O60563 726 aaKnown RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 LILRB3O75022 631 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 DDHD2O94830 711 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 PDGFBP01127 241 aaPredicted RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 NCLP19338 710 aaKnown RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 YWHABP31946 246 aaKnown RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 LAMTOR4Q0VGL1 99 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 SCRN1Q12765 414 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 UBXN11Q5T124 520 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 C15orf39Q6ZRI6 1047 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 GPR149Q86SP6 731 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 FERMT3Q86UX7 667 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 ZNF579Q8NAF0 562 aaKnown RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 HAS1Q92839 578 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 TMEM143Q96AN5 459 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 ACSF2Q96CM8 615 aaPredicted RBP13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 KLHL5Q96PQ7 755 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 LXNQ9BS40 222 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 ZSWIM4Q9H7M6 989 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 MINDY3Q9H8M7 445 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 SSX2IPQ9Y2D8 614 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 FAN1Q9Y2M0 1017 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 KMT2EQ8IZD2 1858 aa13.41□□□□□ -0.26
CBX3P4-202ENST00000540428 INPPL1O15357 1258 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 MARCH6O60337 910 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 B4GALT3O60512 393 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 CNPP09543 421 aaKnown RBP13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 WEE2P0C1S8 567 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 SRGAP2CP0DJJ0 459 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 KLRC2P26717 231 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 AXLP30530 894 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 CLCN4P51793 760 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 POU5F1BQ06416 359 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 SPIRE1Q08AE8 756 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 EMC2Q15006 297 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 TMC5Q6UXY8 1006 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 PIK3AP1Q6ZUJ8 805 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 CCDC149Q6ZUS6 474 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 OTOP3Q7RTS5 596 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 SLFN12Q8IYM2 578 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 RNF149Q8NC42 400 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 ATOH1Q92858 354 aaPredicted RBP13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 CCDC51Q96ER9 411 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 MTRQ99707 1265 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 LARP6Q9BRS8 491 aaKnown RBP13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 RHOBTB2Q9BYZ6 727 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 MRPL17Q9NRX2 175 aaKnown RBP13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 LIMD1Q9UGP4 676 aa13.4□□□□□ -0.26
CBX3P4-202ENST00000540428 PROB1E7EW31 1015 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 NRP1O14786 923 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 ERLIN2O94905 339 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 BAG4O95429 457 aaKnown RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 POMCP01189 267 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 SOD2P04179 222 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 ASGR2P07307 311 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 ITGA4P13612 1032 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 AFF1P51825 1210 aaKnown RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 PTENP60484 403 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 NCBP1Q09161 790 aaKnown RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 MXD4Q14582 209 aaPredicted RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 XKR9Q5GH70 373 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 KANK3Q6NY19 840 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 CYP26C1Q6V0L0 522 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 IFNLR1Q8IU57 520 aaPredicted RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 RNF168Q8IYW5 571 aaPredicted RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 CMASQ8NFW8 434 aaPredicted RBP13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 WASF1Q92558 559 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 HERC2P3Q9BVR0 1158 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 RGL1Q9NZL6 768 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 DPP7Q9UHL4 492 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 CACNA1HO95180 2353 aa13.39□□□□□ -0.27
CBX3P4-202ENST00000540428 SPDYE4A6NLX3 237 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 H0Y858 1186 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 GFRA3O60609 400 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 TSPAN1O60635 241 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 PFKFB2O60825 505 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 LYPLA2O95372 231 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 EFEMP2O95967 443 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 C1RP00736 705 aa13.38□□□□□ -0.27
CBX3P4-202ENST00000540428 URODP06132 367 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms