RNA–Protein interactions for RNA: ENST00000540166.5

DDB1-217, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 3,906 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-217ENST00000540166 A0A087X0B3 334 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 PALMO75781 387 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 SMNDC1O75940 238 aaKnown RBP eCLIP9.35□□□□□ -0.912e-6■■■□□ 17.6
DDB1-217ENST00000540166 SLC25A27O95847 323 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 CHN1P15882 459 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 RASSF2P50749 326 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 ZNF131P52739 623 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 MAP7Q14244 749 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 SEPT7Q16181 437 aaKnown RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 AP1M1Q9BXS5 423 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 MTIF3Q9H2K0 278 aaKnown RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 NKIRAS1Q9NYS0 192 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 CTTNBP2NLQ9P2B4 639 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 PNMA2Q9UL42 364 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 NRXN2Q9P2S2 1712 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 CCDC160A6NGH7 325 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 MSCO60682 206 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 NPM3O75607 178 aaKnown RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 DESP17661 470 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 MSH2P43246 934 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 FAM83BQ5T0W9 1011 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 SNRNP48Q6IEG0 339 aaKnown RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 TLDC1Q6P9B6 456 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 C6orf89Q6UWU4 347 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 RNF180Q86T96 592 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 APLFQ8IW19 511 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 FAM81AQ8TBF8 368 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 SENP6Q9GZR1 1112 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 AFG3L2Q9Y4W6 797 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 TAF1P21675 1872 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 A0A0G2JLL6 359 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 WDR46O15213 610 aaKnown RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 RAD51CO43502 376 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 TTLL1O95922 423 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 BMP3P12645 472 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 EEF2P13639 858 aaKnown RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 ALDH5A1P51649 535 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 SH3BGRP55822 239 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 RHBDL3P58872 404 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 BLMHQ13867 455 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 PRRT2Q7Z6L0 340 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 C7orf61Q8IZ16 206 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 BLIDQ8IZY5 108 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 ENAHQ8N8S7 591 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 PRCCQ92733 491 aaPredicted RBP9.35□□□□□ -0.91
DDB1-217ENST00000540166 FMO2Q99518 471 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 ARHGAP39Q9C0H5 1083 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 R3HDMLQ9H3Y0 253 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 EBF2Q9HAK2 575 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 FAM114A2Q9NRY5 505 aa9.35□□□□□ -0.91
DDB1-217ENST00000540166 A0A1W2PRG0 241 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 GRID2IPA4D2P6 1211 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 LIN7AO14910 233 aaPredicted RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 UBOX5O94941 541 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 KRT18P05783 430 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 PYGLP06737 847 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 STX2P32856 288 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 GJA5P36382 358 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 SLCO1A2P46721 670 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 RIPK1Q13546 671 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 ITIH4Q14624 930 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 INF2Q27J81 1249 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 ACBD5Q5T8D3 534 aaPredicted RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 PRPF38BQ5VTL8 546 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 SFMBT2Q5VUG0 894 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 PEX26Q7Z412 305 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 SPATA21Q7Z572 469 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 FAM228AQ86W67 206 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 DDX42Q86XP3 938 aaKnown RBP eCLIP9.34□□□□□ -0.91
DDB1-217ENST00000540166 SYCP3Q8IZU3 236 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 CCT6BQ92526 530 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 NUDCD1Q96RS6 583 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 PTPN18Q99952 460 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 WDR18Q9BV38 432 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 TXLNGQ9NUQ3 528 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 LARSQ9P2J5 1176 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 ZMYND8Q9ULU4 1186 aaPredicted RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 PACSIN2Q9UNF0 486 aaPredicted RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 C2CD2Q9Y426 696 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 ARFGEF2Q9Y6D5 1785 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 PGRMC1O00264 195 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 STRNO43815 780 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 UPP2O95045 317 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 EARS2Q5JPH6 523 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 TREML2Q5T2D2 321 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 ERICH1Q86X53 443 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 LRRC34Q8IZ02 419 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 NEK9Q8TD19 979 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 ACER1Q8TDN7 264 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 NAP1L3Q99457 506 aaPredicted RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 BMP2KQ9NSY1 1161 aaPredicted RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 SEC63Q9UGP8 760 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 RCCD1A6NED2 376 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 TLR3O15455 904 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 AKR1B1P15121 316 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 ATP5DP30049 168 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 LONP1P36776 959 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 HSPA9P38646 679 aaKnown RBP9.34□□□□□ -0.91
DDB1-217ENST00000540166 PPP1R2P41236 205 aa9.34□□□□□ -0.91
DDB1-217ENST00000540166 NAPAP54920 295 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms