RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 LINC00116Q8NCU8 138 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ERP27Q96DN0 273 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 SMC6Q96SB8 1091 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 KDM4CQ9H3R0 1056 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 SAYSD1Q9NPB0 183 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 ACP6Q9NPH0 428 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 KLHL11Q9NVR0 708 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 CTNNAL1Q9UBT7 734 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 AGTPBP1Q9UPW5 1226 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 SPEF2Q9C093 1822 aa13.9□□□□□ -0.18
MSH6-210ENST00000540021 RGPD5Q99666 1765 aa13.9□□□□□ -0.19
MSH6-210ENST00000540021 FGRP09769 529 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 NQO1P15559 274 aaKnown RBP13.89□□□□□ -0.19
MSH6-210ENST00000540021 AP1ARQ63HQ0 302 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 C4orf33Q8N1A6 199 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 GBP7Q8N8V2 638 aaPredicted RBP13.89□□□□□ -0.19
MSH6-210ENST00000540021 MIEF2Q96C03 454 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 TCHPQ9BT92 498 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 ERVK-5Q9HDB9 667 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 TRIM33Q9UPN9 1127 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 ARL2BPQ9Y2Y0 163 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 COL5A2P05997 1499 aaPredicted RBP13.89□□□□□ -0.19
MSH6-210ENST00000540021 BAZ2AQ9UIF9 1905 aaKnown RBP13.89□□□□□ -0.19
MSH6-210ENST00000540021 ESYT2A0FGR8 921 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 DYNLT1P63172 113 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 TMEM119Q4V9L6 283 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 RBM26Q5T8P6 1007 aaKnown RBP13.89□□□□□ -0.19
MSH6-210ENST00000540021 CCHCR1Q8TD31 782 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 SLC35C1Q96A29 364 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 RNF25Q96BH1 459 aaPredicted RBP13.89□□□□□ -0.19
MSH6-210ENST00000540021 BCAS3Q9H6U6 928 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 MYH6P13533 1939 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 NWD2Q9ULI1 1742 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 POLE2P56282 527 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 PTENP60484 403 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 DNAJC3Q13217 504 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 SPRED3Q2MJR0 410 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 DCUN1D2Q6PH85 259 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 TEX2Q8IWB9 1127 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 AGAP11Q8TF27 550 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 LRRC37BQ96QE4 947 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 OSBPL1AQ9BXW6 950 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 CAMTA1Q9Y6Y1 1673 aa13.89□□□□□ -0.19
MSH6-210ENST00000540021 A0A0G2JND7 137 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 BAG2O95816 211 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 ALDH5A1P51649 535 aaPredicted RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 WDR44Q5JSH3 913 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 ERMARDQ5T6L9 678 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 C6orf163Q5TEZ5 329 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 NUDCD1Q96RS6 583 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 SYNCQ9H7C4 482 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 DBNDD1Q9H9R9 158 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 TXLNGQ9NUQ3 528 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 DIS3Q9Y2L1 958 aaKnown RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 UPP2O95045 317 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 TARSP26639 723 aaKnown RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 NSFP46459 744 aaKnown RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 RASSF2P50749 326 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 USP37Q86T82 979 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 GRK7Q8WTQ7 553 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 DAGLAQ9Y4D2 1042 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 CCDC160A6NGH7 325 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 MFAP3P55082 362 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 COPS2P61201 443 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 DDR1Q08345 913 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 MEX3CQ5U5Q3 659 aaKnown RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 FAM196AQ6ZSG2 479 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 CDCA7Q9BWT1 371 aaPredicted RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 CDC42EP4Q9H3Q1 356 aaKnown RBP13.88□□□□□ -0.19
MSH6-210ENST00000540021 RIOX1Q9H6W3 641 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 KIF9Q9HAQ2 790 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 PNMA3Q9UL41 463 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 LMTK3Q96Q04 1460 aa13.88□□□□□ -0.19
MSH6-210ENST00000540021 FOSP01100 380 aaPredicted RBP13.87□□□□□ -0.19
MSH6-210ENST00000540021 TROVE2P10155 538 aaKnown RBP eCLIP13.87□□□□□ -0.19
MSH6-210ENST00000540021 BIRC2Q13490 618 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 ABCB5Q2M3G0 1257 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 XKR9Q5GH70 373 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 CTAGE3PQ8IX95 158 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 NT5C1BQ96P26 610 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 NACC1Q96RE7 527 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 SLC12A6Q9UHW9 1150 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 GOLGA8RI6L899 631 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 RASSF9O75901 435 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 LUC7L3O95232 432 aaKnown RBP13.87□□□□□ -0.19
MSH6-210ENST00000540021 PEX3P56589 373 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 EPHA7Q15375 998 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 LIN9Q5TKA1 542 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 CCDC62Q6P9F0 684 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 LONP2Q86WA8 852 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 ARMC2Q8NEN0 867 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 LNX1Q8TBB1 728 aaPredicted RBP13.87□□□□□ -0.19
MSH6-210ENST00000540021 POMGNT1Q8WZA1 660 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 ALG3Q92685 438 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 RTFDC1Q9BY42 306 aaPredicted RBP13.87□□□□□ -0.19
MSH6-210ENST00000540021 NARFQ9UHQ1 456 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 TNS2Q63HR2 1409 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 N4BP2Q86UW6 1770 aaPredicted RBP13.87□□□□□ -0.19
MSH6-210ENST00000540021 A8MUI8 341 aa13.87□□□□□ -0.19
MSH6-210ENST00000540021 POLR2MP0CAP2 368 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms