RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RSAD1Q9HA92 442 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 KANSL3Q9P2N6 904 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 LIMD1Q9UGP4 676 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 C2orf16Q68DN1 1984 aa15.2■□□□□ 0.02
SS18-204ENST00000539244 CPLX1O14810 134 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 GAS2O43903 313 aaKnown RBP15.19■□□□□ 0.02
SS18-204ENST00000539244 DDHD2O94830 711 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 P4HBP07237 508 aaKnown RBP15.19■□□□□ 0.02
SS18-204ENST00000539244 CLCN4P51793 760 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 CLCN5P51795 746 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 NPEPPSP55786 919 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 INF2Q27J81 1249 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 UBXN11Q5T124 520 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 ASTLQ6HA08 431 aaPredicted RBP15.19■□□□□ 0.02
SS18-204ENST00000539244 TMC5Q6UXY8 1006 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 C15orf39Q6ZRI6 1047 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 FEZF2Q8TBJ5 459 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 PSPC1Q8WXF1 523 aaKnown RBP15.19■□□□□ 0.02
SS18-204ENST00000539244 AIFM3Q96NN9 605 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 KLHL5Q96PQ7 755 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 EMILIN2Q9BXX0 1053 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 TM6SF1Q9BZW5 370 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 GBP3Q9H0R5 595 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 WRAP73Q9P2S5 460 aaPredicted RBP15.19■□□□□ 0.02
SS18-204ENST00000539244 DMDP11532 3685 aa15.19■□□□□ 0.02
SS18-204ENST00000539244 ZFHX2Q9C0A1 2572 aaPredicted RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 TBX3O15119 743 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 INPPL1O15357 1258 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 ALDH2P05091 517 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 CNPP09543 421 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 GCFC2P16383 781 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 NCLP19338 710 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 RFC5P40937 340 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 NBL1P41271 181 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 AFF1P51825 1210 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 PCBP1Q15365 356 aaKnown RBP eCLIP15.18■□□□□ 0.02
SS18-204ENST00000539244 LETM2Q2VYF4 491 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 CPLX2Q6PUV4 134 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 CCDC149Q6ZUS6 474 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 OTOP3Q7RTS5 596 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 NEK8Q86SG6 692 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 C4orf19Q8IY42 314 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 ZNF579Q8NAF0 562 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 PRPF31Q8WWY3 499 aaKnown RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 ACSF2Q96CM8 615 aaPredicted RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 CEP170P1Q96L14 293 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 PHF20Q9BVI0 1012 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 RHOBTB2Q9BYZ6 727 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 MINDY3Q9H8M7 445 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 CYP46A1Q9Y6A2 500 aa15.18■□□□□ 0.02
SS18-204ENST00000539244 PTPRZ1P23471 2315 aaPredicted RBP15.18■□□□□ 0.02
SS18-204ENST00000539244 ARID2Q68CP9 1835 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 NRP1O14786 923 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 ASAP2O43150 1006 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 EFEMP2O95967 443 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 SOD2P04179 222 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 KLRC2P26717 231 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 LAMTOR4Q0VGL1 99 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 EPHA7Q15375 998 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 FERMT3Q86UX7 667 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 RNF168Q8IYW5 571 aaPredicted RBP15.17■□□□□ 0.02
SS18-204ENST00000539244 CNNM3Q8NE01 707 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 CMASQ8NFW8 434 aaPredicted RBP15.17■□□□□ 0.02
SS18-204ENST00000539244 TCP11Q8WWU5 503 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 HAS1Q92839 578 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 TMEM143Q96AN5 459 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 SNX27Q96L92 541 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 FAM193BQ96PV7 902 aaPredicted RBP15.17■□□□□ 0.02
SS18-204ENST00000539244 UBN1Q9NPG3 1134 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 MRPL17Q9NRX2 175 aaKnown RBP15.17■□□□□ 0.02
SS18-204ENST00000539244 FAN1Q9Y2M0 1017 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 VPS13AQ96RL7 3174 aa15.17■□□□□ 0.02
SS18-204ENST00000539244 CCDC194A0A1B0GVG4 234 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 PAPLNO95428 1278 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 SRGAP2CP0DJJ0 459 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 YWHABP31946 246 aaKnown RBP15.16■□□□□ 0.02
SS18-204ENST00000539244 SPIRE1Q08AE8 756 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 TDGQ13569 410 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 CWF19L1Q69YN2 538 aaKnown RBP15.16■□□□□ 0.02
SS18-204ENST00000539244 CYP26C1Q6V0L0 522 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 COLGALT2Q8IYK4 626 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 SMG8Q8ND04 991 aaKnown RBP15.16■□□□□ 0.02
SS18-204ENST00000539244 RPS6KC1Q96S38 1066 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 NAP1L4Q99733 375 aaKnown RBP15.16■□□□□ 0.02
SS18-204ENST00000539244 LXNQ9BS40 222 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 HERC2P3Q9BVR0 1158 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 MARCH5Q9NX47 278 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 DUSP12Q9UNI6 340 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 KCNJ14Q9UNX9 436 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 SSX2IPQ9Y2D8 614 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 RIF1Q5UIP0 2472 aaKnown RBP15.16■□□□□ 0.02
SS18-204ENST00000539244 STK36Q9NRP7 1315 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 FAM186AA6NE01 2351 aa15.16■□□□□ 0.02
SS18-204ENST00000539244 POMCP01189 267 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 AXLP30530 894 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 PTENP60484 403 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 POU5F1BQ06416 359 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 DSC1Q08554 894 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 EMC2Q15006 297 aa15.15■□□□□ 0.02
SS18-204ENST00000539244 OTUD6AQ7L8S5 288 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms