RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 VWA3AA6NCI4 1184 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 EYA4O95677 639 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 NCLP19338 710 aaKnown RBP16.38■□□□□ 0.21
USP28-204ENST00000537642 PDCP20941 246 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 ERVFC1P60507 584 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 CTC1Q2NKJ3 1217 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 LEXMQ3ZCV2 418 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 NOMO2Q5JPE7 1267 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 KCNK18Q7Z418 384 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 SLC39A11Q8N1S5 342 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 RSPH1Q8WYR4 309 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 MRPS27Q92552 414 aaKnown RBP16.38■□□□□ 0.21
USP28-204ENST00000537642 CCDC51Q96ER9 411 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 CSRNP2Q9H175 543 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 TLR9Q9NR96 1032 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 TBC1D13Q9NVG8 400 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 CLDND1Q9NY35 253 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 DNM3Q9UQ16 869 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 LZTS1Q9Y250 596 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 IPPQ9Y573 584 aa16.38■□□□□ 0.21
USP28-204ENST00000537642 FSCN2O14926 492 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 NCK2O43639 380 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 SYT1P21579 422 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 PPM1AP35813 382 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 LTBRP36941 435 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 NAMPTP43490 491 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 AFF1P51825 1210 aaKnown RBP16.37■□□□□ 0.21
USP28-204ENST00000537642 BCAR1P56945 870 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 NCBP1Q09161 790 aaKnown RBP16.37■□□□□ 0.21
USP28-204ENST00000537642 HYIQ5T013 277 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 PPP4R3CPQ6ZMV5 832 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 CNNM3Q8NE01 707 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.37■□□□□ 0.21
USP28-204ENST00000537642 NECAB3Q96P71 396 aaPredicted RBP16.37■□□□□ 0.21
USP28-204ENST00000537642 PNMA5Q96PV4 448 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 UHRF1Q96T88 793 aaPredicted RBP16.37■□□□□ 0.21
USP28-204ENST00000537642 RNF39Q9H2S5 420 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 FZD8Q9H461 694 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 IGFLR1Q9H665 355 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 NRDE2Q9H7Z3 1164 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 RSAD1Q9HA92 442 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 FOXD4L1Q9NU39 408 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 SPG21Q9NZD8 308 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 CNTNAP2Q9UHC6 1331 aa16.37■□□□□ 0.21
USP28-204ENST00000537642 A0A1B0GUA9 196 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 NT5C1B-RDH14C9J2C7 533 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 H3BQ06 376 aaPredicted RBP16.36■□□□□ 0.21
USP28-204ENST00000537642 LINC01565O15544 149 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 B4GALT3O60512 393 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 ZC3H11AO75152 810 aaKnown RBP eCLIP16.36■□□□□ 0.217e-6■■■■■ 33.7
USP28-204ENST00000537642 RESTQ13127 1097 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 ZRSR1Q15695 479 aaKnown RBP16.36■□□□□ 0.21
USP28-204ENST00000537642 FAM187BQ17R55 369 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 EP400NLQ6ZTU2 488 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 CDR2LQ86X02 465 aaPredicted RBP16.36■□□□□ 0.21
USP28-204ENST00000537642 ZBTB8OSQ8IWT0 167 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 KIFAP3Q92845 792 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 SNX21Q969T3 373 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 PRIMPOLQ96LW4 560 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 RUSC1Q9BVN2 902 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 CCDC113Q9H0I3 377 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 C2orf40Q9H1Z8 148 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 PRMT7Q9NVM4 692 aaPredicted RBP16.36■□□□□ 0.21
USP28-204ENST00000537642 HES2Q9Y543 173 aa16.36■□□□□ 0.21
USP28-204ENST00000537642 TTLL13PA6NNM8 815 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 BMP15O95972 392 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 EDN1P05305 212 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 ITGA4P13612 1032 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 NRIP1P48552 1158 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 ALDH7A1P49419 539 aaKnown RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 KRT17Q04695 432 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 GRIN1Q05586 938 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 RNASELQ05823 741 aaKnown RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 DLX2Q07687 328 aaPredicted RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 ADAM15Q13444 863 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 PPP2R5AQ15172 486 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 RINT1Q6NUQ1 792 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 SLC27A1Q6PCB7 646 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 C1orf186Q6ZWK4 172 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 RBM23Q86U06 439 aaKnown RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 ZNF280BQ86YH2 543 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 DAW1Q8N136 415 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 DEPTORQ8TB45 409 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 URGCPQ8TCY9 931 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 MICAL1Q8TDZ2 1067 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 PPP2R3CQ969Q6 453 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 IFT74Q96LB3 600 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 PLIN2Q99541 437 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 KIFC3Q9BVG8 833 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 GBP3Q9H0R5 595 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 NXF3Q9H4D5 531 aaKnown RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 DNAJB4Q9UDY4 337 aa16.35■□□□□ 0.21
USP28-204ENST00000537642 PUF60Q9UHX1 559 aaKnown RBP16.35■□□□□ 0.21
USP28-204ENST00000537642 INPPL1O15357 1258 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TBX10O75333 385 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 DDHD2O94830 711 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 NPTXRO95502 500 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 POMCP01189 267 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 PRKCBP05771 671 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms