RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NOTUMQ6P988 496 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 AGMOQ6ZNB7 445 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 TAS1R3Q7RTX0 852 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 MAFAQ8NHW3 353 aaPredicted RBP14.34□□□□□ -0.11
VPS28-216ENST00000533806 GDPD5Q8WTR4 605 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 SPIRE2Q8WWL2 714 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 RSPH1Q8WYR4 309 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 KCNN1Q92952 543 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 P2RX5Q93086 422 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 CPB2Q96IY4 423 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 IFT74Q96LB3 600 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 DRC1Q96MC2 740 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 KIFC3Q9BVG8 833 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 PLVAPQ9BX97 442 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 EIF2AQ9BY44 585 aaKnown RBP14.34□□□□□ -0.11
VPS28-216ENST00000533806 TYW1Q9NV66 732 aaKnown RBP14.34□□□□□ -0.11
VPS28-216ENST00000533806 PRMT7Q9NVM4 692 aaPredicted RBP14.34□□□□□ -0.11
VPS28-216ENST00000533806 RCOR1Q9UKL0 485 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 RWDD3Q9Y3V2 267 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 SPTBN5Q9NRC6 3674 aaKnown RBP14.34□□□□□ -0.11
VPS28-216ENST00000533806 CNTNAP2Q9UHC6 1331 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 UNC80Q8N2C7 3258 aa14.33□□□□□ -0.11
VPS28-216ENST00000533806 NPHP3-ACAD11A0A0J9YXS1 232 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 SFI1A8K8P3 1242 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 INPPL1O15357 1258 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 OFD1O75665 1012 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 SSBP05455 408 aaKnown RBP eCLIP14.33□□□□□ -0.12
VPS28-216ENST00000533806 ZNF131P52739 623 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 PEX3P56589 373 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 DNM1Q05193 864 aaKnown RBP14.33□□□□□ -0.12
VPS28-216ENST00000533806 STK38Q15208 465 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 ZBTB8OSQ8IWT0 167 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 DEPTORQ8TB45 409 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 LARP4BQ92615 738 aaKnown RBP14.33□□□□□ -0.12
VPS28-216ENST00000533806 LPPQ93052 612 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 HCSTQ9UBK5 93 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 STK17AQ9UEE5 414 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 ODF2LQ9ULJ1 636 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 XIRP2A4UGR9 3374 aa14.33□□□□□ -0.12
VPS28-216ENST00000533806 CUTAO60888 179 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 PLS3P13797 630 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 IBSPP21815 317 aaPredicted RBP14.32□□□□□ -0.12
VPS28-216ENST00000533806 IGFBP4P22692 258 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 CTNNB1P35222 781 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 NCBP1Q09161 790 aaKnown RBP14.32□□□□□ -0.12
VPS28-216ENST00000533806 RAD51AP2Q09MP3 1159 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 GPM6BQ13491 265 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 CAMK1Q14012 370 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 GIT2Q14161 759 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 MAPK6Q16659 721 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 FOXD4L6Q3SYB3 417 aaPredicted RBP14.32□□□□□ -0.12
VPS28-216ENST00000533806 NT5DC1Q5TFE4 455 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 SLC27A1Q6PCB7 646 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 SHC4Q6S5L8 630 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 FOXD4L3Q6VB84 417 aaPredicted RBP14.32□□□□□ -0.12
VPS28-216ENST00000533806 GPBP1Q86WP2 473 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 RNF169Q8NCN4 708 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 TMEM161BQ8NDZ6 487 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 CNNM3Q8NE01 707 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 HELQQ8TDG4 1101 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 KCNG4Q8TDN1 519 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 PGBD4Q96DM1 585 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 FIZ1Q96SL8 496 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 REEP2Q9BRK0 252 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 RNF39Q9H2S5 420 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 PDZD7Q9H5P4 517 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 TMEM134Q9H6X4 195 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 DAXXQ9UER7 740 aaPredicted RBP14.32□□□□□ -0.12
VPS28-216ENST00000533806 CFAP45Q9UL16 551 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 PLAGL2Q9UPG8 496 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 USP20Q9Y2K6 914 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 RBM19Q9Y4C8 960 aaKnown RBP14.32□□□□□ -0.12
VPS28-216ENST00000533806 IPPQ9Y573 584 aa14.32□□□□□ -0.12
VPS28-216ENST00000533806 GRM6O15303 877 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 PRKCBP05771 671 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 AFF1P51825 1210 aaKnown RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 CACNB1Q02641 598 aaPredicted RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 DMP1Q13316 513 aaPredicted RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 PRPF4BQ13523 1007 aaKnown RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 E2F4Q16254 413 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 LONRF3Q496Y0 759 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 CDR2LQ86X02 465 aaPredicted RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 MRPL38Q96DV4 380 aaKnown RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 CHAMP1Q96JM3 812 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 C11orf84Q9BUA3 381 aaPredicted RBP14.31□□□□□ -0.12
VPS28-216ENST00000533806 PTPRHQ9HD43 1115 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 KMT5AQ9NQR1 393 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 CCDC39Q9UFE4 941 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 KCNG1Q9UIX4 513 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 PCDHA7Q9UN72 937 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 HES2Q9Y543 173 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 MYO9BQ13459 2157 aa14.31□□□□□ -0.12
VPS28-216ENST00000533806 CCDC169A6NNP5 214 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 K7ERI5 159 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 SLC16A4O15374 487 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 ITGB1P05556 798 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 MAPTP10636 758 aaKnown RBP14.3□□□□□ -0.12
VPS28-216ENST00000533806 DNAJB1P25685 340 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 NCKAP1LP55160 1127 aa14.3□□□□□ -0.12
VPS28-216ENST00000533806 NOMO2Q5JPE7 1267 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms