RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 TBC1D13Q9NVG8 400 aa17.17■□□□□ 0.34
CPSF1-211ENST00000533492 ARID2Q68CP9 1835 aa17.17■□□□□ 0.34
CPSF1-211ENST00000533492 HIDE1A8MVS5 230 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 USO1O60763 962 aaKnown RBP17.16■□□□□ 0.34
CPSF1-211ENST00000533492 SPATA31C1P0DKV0 1188 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 ARL2P36404 184 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 TRAPPC10P48553 1259 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 SMC1AQ14683 1233 aaKnown RBP17.16■□□□□ 0.34
CPSF1-211ENST00000533492 RABEP1Q15276 862 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 NOTUMQ6P988 496 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 AGMOQ6ZNB7 445 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 MAEAQ7L5Y9 396 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 MRPL10Q7Z7H8 261 aaKnown RBP17.16■□□□□ 0.34
CPSF1-211ENST00000533492 CATSPER3Q86XQ3 398 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 TMEM87AQ8NBN3 555 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 SMRP1Q8NCR6 262 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 ASAP3Q8TDY4 903 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 POLR3CQ9BUI4 534 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-211ENST00000533492 NRDE2Q9H7Z3 1164 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 RSAD1Q9HA92 442 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 UPF2Q9HAU5 1272 aaKnown RBP17.16■□□□□ 0.34
CPSF1-211ENST00000533492 KANSL3Q9P2N6 904 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 CNTNAP2Q9UHC6 1331 aa17.16■□□□□ 0.34
CPSF1-211ENST00000533492 C19orf67A6NJJ6 358 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 MED24O75448 989 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 CXCL14O95715 111 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 GALTP07902 379 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 ITGA4P13612 1032 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 RBM10P98175 930 aaKnown RBP17.15■□□□□ 0.34
CPSF1-211ENST00000533492 CAPSQ13938 189 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 UBXN11Q5T124 520 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 LLGL2Q6P1M3 1020 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 IFNLR1Q8IU57 520 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-211ENST00000533492 MRPL43Q8N983 215 aaKnown RBP17.15■□□□□ 0.34
CPSF1-211ENST00000533492 CCDC51Q96ER9 411 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 LRFN3Q9BTN0 628 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 POLR3FQ9H1D9 316 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-211ENST00000533492 UBN1Q9NPG3 1134 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 KIF3AQ9Y496 699 aa17.15■□□□□ 0.34
CPSF1-211ENST00000533492 TSPAN1O60635 241 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 GPR37L1O60883 481 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 ALDH2P05091 517 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 NCLP19338 710 aaKnown RBP17.14■□□□□ 0.33
CPSF1-211ENST00000533492 GLRA2P23416 452 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 RPA1P27694 616 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 VPS52Q8N1B4 723 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 MCPH1Q8NEM0 835 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 VN1R2Q8NFZ6 395 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 IGSF21Q96ID5 467 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 CPB2Q96IY4 423 aa17.14■□□□□ 0.33
CPSF1-211ENST00000533492 TRIM6Q9C030 488 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-211ENST00000533492 DBR1Q9UK59 544 aaKnown RBP17.14■□□□□ 0.33
CPSF1-211ENST00000533492 USP15Q9Y4E8 981 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-211ENST00000533492 FAM86C2PA6NEL3 165 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 C2orf71A6NGG8 1288 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 LRRIQ4A6NIV6 560 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 DCXO43602 365 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 POMCP01189 267 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 MBTD1Q05BQ5 628 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 HAUS3Q68CZ6 603 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 POTEGQ6S5H5 508 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 TMEM184AQ6ZMB5 413 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 DDX53Q86TM3 631 aaKnown RBP17.13■□□□□ 0.33
CPSF1-211ENST00000533492 ZNF280BQ86YH2 543 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 HACE1Q8IYU2 909 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 EIF2AQ9BY44 585 aaKnown RBP17.13■□□□□ 0.33
CPSF1-211ENST00000533492 NFKBIZQ9BYH8 718 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 CSRNP2Q9H175 543 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 GPRC5CQ9NQ84 441 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 DNAJB4Q9UDY4 337 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 FAN1Q9Y2M0 1017 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 IPPQ9Y573 584 aa17.13■□□□□ 0.33
CPSF1-211ENST00000533492 ARHGEF35A5YM69 484 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 HOXB8P17481 243 aaPredicted RBP17.12■□□□□ 0.33
CPSF1-211ENST00000533492 ARF4P18085 180 aaPredicted RBP17.12■□□□□ 0.33
CPSF1-211ENST00000533492 MUTP22033 750 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 U2AF2P26368 475 aaKnown RBP eCLIP17.12■□□□□ 0.33
CPSF1-211ENST00000533492 CCT6AP40227 531 aaKnown RBP17.12■□□□□ 0.33
CPSF1-211ENST00000533492 SLC11A1P49279 550 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 GIT2Q14161 759 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 NBR1Q14596 966 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 ANKRD54Q6NXT1 300 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 TMEM173Q86WV6 379 aaPredicted RBP17.12■□□□□ 0.33
CPSF1-211ENST00000533492 ZBTB8OSQ8IWT0 167 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 SMG8Q8ND04 991 aaKnown RBP17.12■□□□□ 0.33
CPSF1-211ENST00000533492 CASP10Q92851 521 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 TMEM175Q9BSA9 504 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 RAB34Q9BZG1 259 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 LRWD1Q9UFC0 647 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 RAPGEFL1Q9UHV5 662 aa17.12■□□□□ 0.33
CPSF1-211ENST00000533492 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-211ENST00000533492 DDHD2O94830 711 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 CTSAP10619 480 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 FXR2P51116 673 aaKnown RBP eCLIP17.11■□□□□ 0.338e-7■■■■□ 26.7
CPSF1-211ENST00000533492 AFF1P51825 1210 aaKnown RBP17.11■□□□□ 0.33
CPSF1-211ENST00000533492 PTGDRQ13258 359 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 KCNC3Q14003 757 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 MCTP1Q6DN14 999 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 PADI6Q6TGC4 694 aa17.11■□□□□ 0.33
CPSF1-211ENST00000533492 GAD1Q99259 594 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms