RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MRFAP1L1Q96HT8 127 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 SORCS2Q96PQ0 1159 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 SCAND2PQ9GZW5 306 aaPredicted RBP5.52□□□□□ -1.53
CD44-235ENST00000532339 VWA7Q9Y334 891 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 EFCAB6Q5THR3 1501 aa5.52□□□□□ -1.53
CD44-235ENST00000532339 PMS2P1A4D2B8 440 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 OPA1O60313 960 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 GLRX3O76003 335 aaKnown RBP5.51□□□□□ -1.53
CD44-235ENST00000532339 HSPA1AP0DMV8 641 aaKnown RBP5.51□□□□□ -1.53
CD44-235ENST00000532339 HSPA1BP0DMV9 641 aaKnown RBP5.51□□□□□ -1.53
CD44-235ENST00000532339 KIF11P52732 1056 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 SESN2P58004 480 aaPredicted RBP5.51□□□□□ -1.53
CD44-235ENST00000532339 FOXE3Q13461 319 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 USP39Q53GS9 565 aaKnown RBP5.51□□□□□ -1.53
CD44-235ENST00000532339 MAMDC4Q6UXC1 1216 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 LPPQ93052 612 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 CLUHP3Q96NS8 147 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 ZNF341Q9BYN7 854 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 CABP5Q9NP86 173 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 ACSS2Q9NR19 701 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 PLA2G3Q9NZ20 509 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 TBX22Q9Y458 520 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 LAMC1P11047 1609 aa5.51□□□□□ -1.53
CD44-235ENST00000532339 MARF1Q9Y4F3 1742 aaKnown RBP5.51□□□□□ -1.53
CD44-235ENST00000532339 ADGRB3O60242 1522 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 SLC26A4O43511 780 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 MSX2P35548 267 aaPredicted RBP5.5□□□□□ -1.53
CD44-235ENST00000532339 FLT3P36888 993 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 RGS19P49795 217 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 ROM1Q03395 351 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 HGFACQ04756 655 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 FOXL1Q12952 345 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 MIIPQ5JXC2 388 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 KLHDC10Q6PID8 442 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 FAM177A1Q8N128 213 aaPredicted RBP5.5□□□□□ -1.53
CD44-235ENST00000532339 PCIF1Q9H4Z3 704 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 SAE1Q9UBE0 346 aaPredicted RBP5.5□□□□□ -1.53
CD44-235ENST00000532339 PIK3R4Q99570 1358 aa5.5□□□□□ -1.53
CD44-235ENST00000532339 USP19O94966 1318 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 ABCC5O15440 1437 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 TMEM131LA2VDJ0 1609 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 PTPDC1A2A3K4 754 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 H7C1D1 291 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 H2AFYO75367 372 aaKnown RBP5.49□□□□□ -1.53
CD44-235ENST00000532339 DNAJC8O75937 253 aaPredicted RBP5.49□□□□□ -1.53
CD44-235ENST00000532339 TOMM70O94826 608 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 PRLP01236 227 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 CYP17A1P05093 508 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 SLC6A3Q01959 620 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 HHEXQ03014 270 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 SQSTM1Q13501 440 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 GRM7Q14831 915 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 ZNF174Q15697 407 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 CCDC144BQ3MJ40 725 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 GIMAP6Q6P9H5 292 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 UBE2R2Q712K3 238 aaPredicted RBP5.49□□□□□ -1.53
CD44-235ENST00000532339 ADGRE4PQ86SQ3 457 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 GPR135Q8IZ08 494 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 BCL6BQ8N143 479 aaPredicted RBP5.49□□□□□ -1.53
CD44-235ENST00000532339 SHCBP1Q8NEM2 672 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 GFM2Q969S9 779 aaKnown RBP5.49□□□□□ -1.53
CD44-235ENST00000532339 ZNF503Q96F45 646 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 MAML3Q96JK9 1138 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 TNPO3Q9Y5L0 923 aaKnown RBP5.49□□□□□ -1.53
CD44-235ENST00000532339 ADCY9O60503 1353 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 PLEKHG1Q9ULL1 1385 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 CASZ1Q86V15 1759 aa5.49□□□□□ -1.53
CD44-235ENST00000532339 PIK3C2BO00750 1634 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 UBA6A0AVT1 1052 aaPredicted RBP5.48□□□□□ -1.53
CD44-235ENST00000532339 ACRV1P26436 265 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 RGS3P49796 1198 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 HMGA2P52926 109 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 ADAM15Q13444 863 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 TTC38Q5R3I4 469 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 SLFN12LQ6IEE8 588 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 NME9Q86XW9 330 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 C1orf210Q8IVY1 113 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 ZFPM1Q8IX07 1006 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 ZNF808Q8N4W9 903 aaPredicted RBP5.48□□□□□ -1.53
CD44-235ENST00000532339 OR5AN1Q8NGI8 311 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 SH3TC2Q8TF17 1288 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 RABGGTAQ92696 567 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 EXTL1Q92935 676 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 CSRNP2Q9H175 543 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 PIF1Q9H611 641 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 ZSWIM4Q9H7M6 989 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 TLR9Q9NR96 1032 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 CTDP1Q9Y5B0 961 aaPredicted RBP5.48□□□□□ -1.53
CD44-235ENST00000532339 HS3ST3A1Q9Y663 406 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 WDR90Q96KV7 1748 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 KIAA1210Q9ULL0 1709 aa5.48□□□□□ -1.53
CD44-235ENST00000532339 TRAF5O00463 557 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 DVL2O14641 736 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 SLPIP03973 132 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 HIBADHP31937 336 aaKnown RBP5.47□□□□□ -1.53
CD44-235ENST00000532339 ZNF460Q14592 562 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 DGKDQ16760 1214 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 PIK3R6Q5UE93 754 aa5.47□□□□□ -1.53
CD44-235ENST00000532339 NOP9Q86U38 636 aaKnown RBP5.47□□□□□ -1.53
CD44-235ENST00000532339 SGMS1Q86VZ5 419 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms