RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 KLHL5Q96PQ7 755 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 DDX23Q9BUQ8 820 aaKnown RBP9.38□□□□□ -0.91
CD44-232ENST00000531118 EMILIN2Q9BXX0 1053 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 RHOBTB2Q9BYZ6 727 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 NUMBLQ9Y6R0 609 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 COL4A2P08572 1712 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 ZZEF1O43149 2961 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 CARNS1A5YM72 827 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 ZBTB42B2RXF5 422 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 ANHXE9PGG2 379 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 CCER2I3L3R5 266 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 HBP1O60381 514 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 GPR32O75388 356 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 PROS1P07225 676 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 CNPP09543 421 aaKnown RBP9.37□□□□□ -0.91
CD44-232ENST00000531118 KLRC2P26717 231 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 UBXN2BQ14CS0 331 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 MLF2Q15773 248 aaPredicted RBP9.37□□□□□ -0.91
CD44-232ENST00000531118 LAIR1Q6GTX8 287 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 TSSK4Q6SA08 328 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 SMG7Q92540 1137 aaKnown RBP9.37□□□□□ -0.91
CD44-232ENST00000531118 LTB4R2Q9NPC1 389 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 JADE2Q9NQC1 790 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 ZSWIM5Q9P217 1185 aa9.37□□□□□ -0.91
CD44-232ENST00000531118 NFASCO94856 1347 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 B4GALT3O60512 393 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 LRP3O75074 770 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 SSBP05455 408 aaKnown RBP eCLIP9.36□□□□□ -0.91
CD44-232ENST00000531118 ZSCAN20P17040 1043 aaPredicted RBP9.36□□□□□ -0.91
CD44-232ENST00000531118 SLC11A1P49279 550 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 SLC26A2P50443 739 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 CLCN3P51790 818 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 COPS2P61201 443 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 LPAL2Q16609 132 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 CYP26C1Q6V0L0 522 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 PRR23CQ6ZRP0 262 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 CCDC60Q8IWA6 550 aaPredicted RBP9.36□□□□□ -0.91
CD44-232ENST00000531118 ST13P5Q8NFI4 369 aaPredicted RBP9.36□□□□□ -0.91
CD44-232ENST00000531118 PIBF1Q8WXW3 757 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 RSPH1Q8WYR4 309 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 ZNF707Q96C28 371 aaPredicted RBP9.36□□□□□ -0.91
CD44-232ENST00000531118 OSBPL6Q9BZF3 934 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 KRT23Q9C075 422 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 NRDE2Q9H7Z3 1164 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 TBC1D13Q9NVG8 400 aa9.36□□□□□ -0.91
CD44-232ENST00000531118 MTF2Q9Y483 593 aaPredicted RBP9.36□□□□□ -0.91
CD44-232ENST00000531118 FLNBO75369 2602 aaKnown RBP9.36□□□□□ -0.91
CD44-232ENST00000531118 TDRD15B5MCY1 1934 aaKnown RBP9.35□□□□□ -0.91
CD44-232ENST00000531118 IGKV6D-21A0A0A0MT36 114 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 A0A0U1RQF3 1178 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 CCDC195A0A1B0GUA6 201 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 RFPL2O75678 378 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 GLUD1P00367 558 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 GALTP07902 379 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 TDGF1P13385 188 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 LAMP2P13473 410 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 MFAP1P55081 439 aaKnown RBP9.35□□□□□ -0.91
CD44-232ENST00000531118 KCNC4Q03721 635 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 PRKCQQ04759 706 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 ITGB3BPQ13352 177 aaPredicted RBP9.35□□□□□ -0.91
CD44-232ENST00000531118 SNW1Q13573 536 aaKnown RBP9.35□□□□□ -0.91
CD44-232ENST00000531118 UBE2SQ16763 222 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 TUSC1Q2TAM9 212 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 ZNF484Q5JVG2 852 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 N4BP2L1Q5TBK1 243 aaPredicted RBP9.35□□□□□ -0.91
CD44-232ENST00000531118 ELMSAN1Q6PJG2 1045 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 DDX1Q92499 740 aaKnown RBP9.35□□□□□ -0.91
CD44-232ENST00000531118 SDF4Q9BRK5 362 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 HERC2P3Q9BVR0 1158 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 CNNM2Q9H8M5 875 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 SEMA4GQ9NTN9 838 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 DNAJB4Q9UDY4 337 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 RAB23Q9ULC3 237 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 ZMIZ1Q9ULJ6 1067 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 SDK1Q7Z5N4 2213 aa9.35□□□□□ -0.91
CD44-232ENST00000531118 GCN1Q92616 2671 aaKnown RBP9.34□□□□□ -0.91
CD44-232ENST00000531118 FAM170BA6NMN3 283 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 SOBPA7XYQ1 873 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 BACH1O14867 736 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 MAFGO15525 162 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 GDF9O60383 454 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 LILRB3O75022 631 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 ATG7O95352 703 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 PAPLNO95428 1278 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 CCNE2O96020 404 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 URODP06132 367 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 ADH1AP07327 375 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 RETP07949 1114 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 FGFR4P22455 802 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 TARSP26639 723 aaKnown RBP9.34□□□□□ -0.91
CD44-232ENST00000531118 GPC5P78333 572 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 HNRNPUQ00839 825 aaKnown RBP eCLIP9.34□□□□□ -0.91
CD44-232ENST00000531118 C20orf194Q5TEA3 1177 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 FAM160B1Q5W0V3 765 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 UNQ6494/PRO21346Q6UXR6 183 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 RSPO2Q6UXX9 243 aaPredicted RBP9.34□□□□□ -0.91
CD44-232ENST00000531118 CYB5R4Q7L1T6 521 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 LINC01465Q8N7H1 131 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 FGF14Q92915 247 aa9.34□□□□□ -0.91
CD44-232ENST00000531118 LPPQ93052 612 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms