RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	KIAA1107	Q9UPP5	1409 aa		6.56	□□□□□ -1.36
CD44-231	ENST00000531110	MYPN	Q86TC9	1320 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	GOLGA6C	A6NDK9	693 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	GOLGA6B	A6NDN3	693 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	IPO8	O15397	1037 aa	Known RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	CNOT4	O95628	575 aa	Known RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	GOLGA6D	P0CG33	693 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	ZNF888	P0CJ79	500 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	TNNT3	P45378	269 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	IRX1	P78414	480 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	AMPD3	Q01432	767 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	PCOLCE	Q15113	449 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	FSCN1	Q16658	493 aa	Known RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	LONRF3	Q496Y0	759 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	FILIP1L	Q4L180	1135 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	ZBTB41	Q5SVQ8	909 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	IQSEC1	Q6DN90	963 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	ZNF280D	Q6N043	979 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	USP30	Q70CQ3	517 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	LARP4	Q71RC2	724 aa	Known RBP eCLIP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	DDX42	Q86XP3	938 aa	Known RBP eCLIP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	ZDHHC14	Q8IZN3	488 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	CDYL2	Q8N8U2	506 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	DYDC2	Q96IM9	177 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	ORAI2	Q96SN7	254 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	SEMA4A	Q9H3S1	761 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	GOLGA6A	Q9NYA3	693 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	FRMD4B	Q9Y2L6	1034 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	CTDP1	Q9Y5B0	961 aa	Predicted RBP	6.55	□□□□□ -1.36
CD44-231	ENST00000531110	PCDHB6	Q9Y5E3	794 aa		6.55	□□□□□ -1.36
CD44-231	ENST00000531110	SMARCA2	P51531	1590 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	UQCRHL	A0A096LP55	91 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	ANKRD62	A6NC57	917 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	ARHGAP6	O43182	974 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	CCP110	O43303	1012 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	NRP2	O60462	931 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	TPM3	P06753	285 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	UQCRH	P07919	91 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	MSN	P26038	577 aa	Known RBP	6.54	□□□□□ -1.36
CD44-231	ENST00000531110	CTSW	P56202	376 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	TMPRSS15	P98073	1019 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	TMED1	Q13445	227 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	MUM1L1	Q5H9M0	696 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	C1QTNF12	Q5T7M4	302 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	NOL8	Q76FK4	1167 aa	Known RBP	6.54	□□□□□ -1.36
CD44-231	ENST00000531110	MYRIP	Q8NFW9	859 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	C20orf173	Q96LM9	149 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	WDR92	Q96MX6	357 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	AGAP3	Q96P47	875 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	PCDH12	Q9NPG4	1184 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	CDC42EP3	Q9UKI2	254 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	COL4A3BP	Q9Y5P4	624 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	PPP2R3B	Q9Y5P8	575 aa		6.54	□□□□□ -1.36
CD44-231	ENST00000531110	UHRF1BP1L	A0JNW5	1464 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	IL16	Q14005	1332 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	ALG1L2	C9J202	215 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	TPD52L2	O43399	206 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	DHX16	O60231	1041 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	B4GALT4	O60513	344 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	SEC24D	O94855	1032 aa	Predicted RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	APOL3	O95236	402 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	HSP90AB1	P08238	724 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	CAPN2	P17655	700 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	ENPP1	P22413	925 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	HGFAC	Q04756	655 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	CHAF1A	Q13111	956 aa	Predicted RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	PTPRO	Q16827	1216 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	JAKMIP3	Q5VZ66	844 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	UNQ6494/PRO21346	Q6UXR6	183 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	GPR155	Q7Z3F1	870 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	SUGP1	Q8IWZ8	645 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	PAWR	Q96IZ0	340 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	CEP89	Q96ST8	783 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	NOL10	Q9BSC4	688 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	FAM126A	Q9BYI3	521 aa	Predicted RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	ADAM7	Q9H2U9	754 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	DEF6	Q9H4E7	631 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	TOPORS	Q9NS56	1045 aa	Predicted RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	CWC15	Q9P013	229 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	TMPRSS11E	Q9UL52	423 aa		6.53	□□□□□ -1.36
CD44-231	ENST00000531110	NOL7	Q9UMY1	257 aa	Known RBP	6.53	□□□□□ -1.36
CD44-231	ENST00000531110	SMG6	Q86US8	1419 aa	Known RBP	6.52	□□□□□ -1.37
CD44-231	ENST00000531110	PRSS38	A1L453	326 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	PRICKLE3	O43900	615 aa	Predicted RBP	6.52	□□□□□ -1.37
CD44-231	ENST00000531110	FSBP	O95073	299 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	ITGB3	P05106	788 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	FAM200B	P0CF97	657 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	VDR	P11473	427 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	STAT5B	P51692	787 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	ANTXR2	P58335	489 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	RAC3	P60763	192 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	GAGE13	Q4V321	117 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	HSP90AB2P	Q58FF8	381 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	CCDC30	Q5VVM6	783 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	LHFPL2	Q6ZUX7	228 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	SLC41A1	Q8IVJ1	513 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	LMBR1	Q8WVP7	490 aa		6.52	□□□□□ -1.37
CD44-231	ENST00000531110	SYAP1	Q96A49	352 aa	Predicted RBP	6.52	□□□□□ -1.37

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