RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ASAP2O43150 1006 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 ZNF623O75123 536 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 SLITRK3O94933 977 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 POMCP01189 267 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 WEE2P0C1S8 567 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 HOXB8P17481 243 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 ZXDAP98168 799 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 NCBP1Q09161 790 aaKnown RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 KCNC3Q14003 757 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 RARS2Q5T160 578 aaKnown RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 KANK3Q6NY19 840 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 TRIM67Q6ZTA4 783 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 C12orf76Q8N812 135 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 NSUN7Q8NE18 718 aaKnown RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 BCL7CQ8WUZ0 217 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 PBXIP1Q96AQ6 731 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 IGSF21Q96ID5 467 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 CPB2Q96IY4 423 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 APOL6Q9BWW8 343 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 TTC12Q9H892 705 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-204ENST00000529288 RSAD1Q9HA92 442 aa14.49□□□□□ -0.09
CPSF1-204ENST00000529288 GAS2O43903 313 aaKnown RBP14.48□□□□□ -0.09
CPSF1-204ENST00000529288 NEMFO60524 1076 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 DDHD2O94830 711 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 ALDH2P05091 517 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 ITGA4P13612 1032 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 AFF1P51825 1210 aaKnown RBP14.48□□□□□ -0.09
CPSF1-204ENST00000529288 SPIRE1Q08AE8 756 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 TFDP1Q14186 410 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 UBXN11Q5T124 520 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 AGMOQ6ZNB7 445 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 MAEAQ7L5Y9 396 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 DDX53Q86TM3 631 aaKnown RBP14.48□□□□□ -0.09
CPSF1-204ENST00000529288 TNFRSF25Q93038 417 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 ZBP1Q9H171 429 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 FAN1Q9Y2M0 1017 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 C5orf42Q9H799 3197 aa14.48□□□□□ -0.09
CPSF1-204ENST00000529288 WNT7AO00755 349 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 CTSAP10619 480 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 EPCAMP16422 314 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 HOXA11P31270 313 aaPredicted RBP14.47□□□□□ -0.09
CPSF1-204ENST00000529288 MCM7P33993 719 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 SAFBQ15424 915 aaKnown RBP eCLIP14.47□□□□□ -0.09
CPSF1-204ENST00000529288 MRPL10Q7Z7H8 261 aaKnown RBP14.47□□□□□ -0.09
CPSF1-204ENST00000529288 ALYREFQ86V81 257 aaKnown RBP14.47□□□□□ -0.09
CPSF1-204ENST00000529288 ASAP3Q8TDY4 903 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 PIGOQ8TEQ8 1089 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 RSPH1Q8WYR4 309 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 FBXL18Q96ME1 805 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 EIF2AQ9BY44 585 aaKnown RBP14.47□□□□□ -0.09
CPSF1-204ENST00000529288 ADAM7Q9H2U9 754 aa14.47□□□□□ -0.09
CPSF1-204ENST00000529288 PRG3Q9Y2Y8 225 aaPredicted RBP14.47□□□□□ -0.09
CPSF1-204ENST00000529288 CARNS1A5YM72 827 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 C2CD2LO14523 706 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 B4GALT3O60512 393 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 TSPAN1O60635 241 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 USO1O60763 962 aaKnown RBP14.46□□□□□ -0.09
CPSF1-204ENST00000529288 SEC24BO95487 1268 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 KLRC2P26717 231 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 OR1G1P47890 313 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 GIT2Q14161 759 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 MXD4Q14582 209 aaPredicted RBP14.46□□□□□ -0.09
CPSF1-204ENST00000529288 CABP7Q86V35 215 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 CCDC83Q8IWF9 413 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 SUGP1Q8IWZ8 645 aaKnown RBP14.46□□□□□ -0.09
CPSF1-204ENST00000529288 HSD17B14Q9BPX1 270 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 EMILIN2Q9BXX0 1053 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 TRIM6Q9C030 488 aaPredicted RBP14.46□□□□□ -0.09
CPSF1-204ENST00000529288 POMKQ9H5K3 350 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 XPNPEP1Q9NQW7 623 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 ANKEF1Q9NU02 776 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 KANSL3Q9P2N6 904 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 NR2E1Q9Y466 385 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 HES2Q9Y543 173 aa14.46□□□□□ -0.09
CPSF1-204ENST00000529288 CNTNAP2Q9UHC6 1331 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 POTEMA6NI47 508 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 NRP1O14786 923 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 EIF5BO60841 1220 aaKnown RBP14.45□□□□□ -0.1
CPSF1-204ENST00000529288 DGAT1O75907 488 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 MYBP10242 640 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 NCLP19338 710 aaKnown RBP14.45□□□□□ -0.1
CPSF1-204ENST00000529288 HOXD11P31277 338 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-204ENST00000529288 MTHFRP42898 656 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 PTENP60484 403 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 ITIH3Q06033 890 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 CAPSQ13938 189 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 PTPN21Q16825 1174 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 ATAT1Q5SQI0 421 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 NOTUMQ6P988 496 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 TMC5Q6UXY8 1006 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 CDR2LQ86X02 465 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-204ENST00000529288 SMG8Q8ND04 991 aaKnown RBP14.45□□□□□ -0.1
CPSF1-204ENST00000529288 CNNM3Q8NE01 707 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 RIPOR3Q96MK2 946 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 NECTIN4Q96NY8 510 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 GAD1Q99259 594 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 TMEM175Q9BSA9 504 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 VN1R3Q9BXE9 311 aa14.45□□□□□ -0.1
CPSF1-204ENST00000529288 POLR3FQ9H1D9 316 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-204ENST00000529288 TMEM60Q9H2L4 133 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms