RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PAGE5Q96GU1 130 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 C7orf25Q9BPX7 421 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 TNMDQ9H2S6 317 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 CRISPLD1Q9H336 500 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 C11orf49Q9H6J7 331 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 RUBCNLQ9H714 662 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 ZNF302Q9NR11 478 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 BLOC1S4Q9NUP1 217 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 ERAP1Q9NZ08 941 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 KCND2Q9NZV8 630 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 GABBR1Q9UBS5 961 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 PPME1Q9Y570 386 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 KAT6AQ92794 2004 aa8.23□□□□□ -1.09
CD44-228ENST00000528455 DNAH12Q6ZR08 3092 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 E9PMD0 336 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 H3BRB1 525 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 ADCY6O43306 1168 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 ZEB2O60315 1214 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 STBD1O95210 358 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 THBS1P07996 1170 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 PLA2G4BP0C869 781 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 YWHABP31946 246 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 SARSP49591 514 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 SLC12A3P55017 1021 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 PSMC6P62333 389 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 CYP4A11Q02928 519 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 ZRSR1Q15695 479 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 DBN1Q16643 649 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 HABP4Q5JVS0 413 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 CCDC183Q5T5S1 534 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 NT5DC1Q5TFE4 455 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 CCDC60Q8IWA6 550 aaPredicted RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 HOMEZQ8IX15 550 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 NPAS3Q8IXF0 933 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 KLHDC9Q8NEP7 349 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 SPATA20Q8TB22 786 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 DIS3LQ8TF46 1054 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 AFG1LQ8WV93 481 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 RAD54LQ92698 747 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 GLG1Q92896 1179 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 FAM167AQ96KS9 214 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 GSDMAQ96QA5 445 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 PCYT2Q99447 389 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 LXNQ9BS40 222 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 C16orf70Q9BSU1 422 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 UPF3AQ9H1J1 476 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 NUP62CLQ9H1M0 184 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 CLSTN2Q9H4D0 955 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 TUT1Q9H6E5 874 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 SEPT3Q9UH03 358 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 DDX20Q9UHI6 824 aaKnown RBP8.22□□□□□ -1.09
CD44-228ENST00000528455 KCNG1Q9UIX4 513 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 EMSYQ7Z589 1322 aa8.22□□□□□ -1.09
CD44-228ENST00000528455 PVALEFA0A1B0GWK0 134 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 H3BM21 787 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 ZBTB39O15060 712 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 ZNF862O60290 1169 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 HBP1O60381 514 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 SMC2O95347 1197 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 MMP3P08254 477 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 CST5P28325 142 aaPredicted RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 SP4Q02446 784 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 POSTNQ15063 836 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 CAMK4Q16566 473 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 FSCN1Q16658 493 aaKnown RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 ARSHQ5FYA8 562 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 ARSJQ5FYB0 599 aaPredicted RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 GJC2Q5T442 439 aaPredicted RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 CAVIN1Q6NZI2 390 aaKnown RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 RBM43Q6ZSC3 357 aaKnown RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 ANO5Q75V66 913 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 KCNK18Q7Z418 384 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 TLK2Q86UE8 772 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 PCSK9Q8NBP7 692 aaKnown RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 ARRDC4Q8NCT1 418 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 PIGOQ8TEQ8 1089 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 MYO19Q96H55 970 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 PLIN2Q99541 437 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 TIPINQ9BVW5 301 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 GTPBP4Q9BZE4 634 aaKnown RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 SAP130Q9H0E3 1048 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.21□□□□□ -1.15e-38■■■■■ 698.7
CD44-228ENST00000528455 PDLIM7Q9NR12 457 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 TMEM63CQ9P1W3 806 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 WRAP73Q9P2S5 460 aaPredicted RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 ZNF215Q9UL58 517 aaPredicted RBP8.21□□□□□ -1.1
CD44-228ENST00000528455 TELO2Q9Y4R8 837 aa8.21□□□□□ -1.1
CD44-228ENST00000528455 A0A1W2PNR3 127 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 MYMKA6NI61 221 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 RRN3P2A6NIE6 340 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 HAS3O00219 553 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 TERTO14746 1132 aaKnown RBP8.2□□□□□ -1.1
CD44-228ENST00000528455 SORBS3O60504 671 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 ADAMTS4O75173 837 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 CABYRO75952 493 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 LGALS2P05162 132 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 CYP11B2P19099 503 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 GUCY2CP25092 1073 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 AFMP43652 599 aa8.2□□□□□ -1.1
CD44-228ENST00000528455 RARRES1P49788 294 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms