RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SMC1BQ8NDV3 1235 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 GLG1Q92896 1179 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 SAAL1Q96ER3 474 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 PARK7Q99497 189 aaKnown RBP22.54■■□□□ 1.2
VPS28-209ENST00000528142 TLL2Q9Y6L7 1015 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 DUSP10Q9Y6W6 482 aa22.54■■□□□ 1.2
VPS28-209ENST00000528142 N4BP1O75113 896 aaKnown RBP22.53■■□□□ 1.2
VPS28-209ENST00000528142 GARTP22102 1010 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 ARID5AQ03989 594 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 RGMBQ6NW40 437 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 ZNF467Q7Z7K2 595 aaPredicted RBP22.53■■□□□ 1.2
VPS28-209ENST00000528142 TRIM50Q86XT4 487 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 ZNF710Q8N1W2 664 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 ATP8B4Q8TF62 1192 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 DAAM1Q9Y4D1 1078 aa22.53■■□□□ 1.2
VPS28-209ENST00000528142 BZW2Q9Y6E2 419 aaKnown RBP22.53■■□□□ 1.2
VPS28-209ENST00000528142 FAM155AB1AL88 458 aaPredicted RBP22.52■■□□□ 1.2
VPS28-209ENST00000528142 ZBTB42B2RXF5 422 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 HNRNPDLO14979 420 aaKnown RBP22.52■■□□□ 1.2
VPS28-209ENST00000528142 PJA2O43164 708 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 MAGEA1P43355 309 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 SLC18A3Q16572 532 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 MFSD14AQ96MC6 490 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 NAPGQ99747 312 aaPredicted RBP22.52■■□□□ 1.2
VPS28-209ENST00000528142 STK33Q9BYT3 514 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 RBM47A0AV96 593 aaKnown RBP22.52■■□□□ 1.2
VPS28-209ENST00000528142 GCLMP48507 274 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 PTK2Q05397 1052 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 PLCB4Q15147 1175 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 EPC2Q52LR7 807 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 GPR142Q7Z601 462 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 DEPTORQ8TB45 409 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 POMGNT1Q8WZA1 660 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 ANKRD7Q92527 254 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 KATNBL1Q9H079 304 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 VTA1Q9NP79 307 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 APEX2Q9UBZ4 518 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 DNAJC12Q9UKB3 198 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 STYXL1Q9Y6J8 313 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 IVNS1ABPQ9Y6Y0 642 aa22.52■■□□□ 1.2
VPS28-209ENST00000528142 ZNFX1Q9P2E3 1918 aaKnown RBP22.52■■□□□ 1.2
VPS28-209ENST00000528142 PIGRP01833 764 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 MARK3P27448 753 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 FAM110CQ1W6H9 321 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 MAMDC4Q6UXC1 1216 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 ZNF571Q7Z3V5 609 aaPredicted RBP22.51■■□□□ 1.19
VPS28-209ENST00000528142 TMC2Q8TDI7 906 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 PARD3BQ8TEW8 1205 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 CARD6Q9BX69 1037 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 TMEM117Q9H0C3 514 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 USP20Q9Y2K6 914 aa22.51■■□□□ 1.19
VPS28-209ENST00000528142 A0A087X0T9 212 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 IGKV6-21A0A0C4DH24 114 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 LRRIQ4A6NIV6 560 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 IGF2BP3O00425 579 aaKnown RBP eCLIP22.5■■□□□ 1.19
VPS28-209ENST00000528142 SLC10A3P09131 477 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 FAM228BP0C875 321 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 STAT1P42224 750 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 SLC26A2P50443 739 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 ARHGAP1Q07960 439 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 DRP2Q13474 957 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 TUBB2AQ13885 445 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 GRB14Q14449 540 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 PHLDB3Q6NSJ2 640 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 ZIC5Q96T25 663 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 TUBB2BQ9BVA1 445 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 GPR88Q9GZN0 384 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 SMARCAD1Q9H4L7 1026 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 TMEM134Q9H6X4 195 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 ADAMTS1Q9UHI8 967 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 F8VZ95 297 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 TOMM70O94826 608 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 ENPEPQ07075 957 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 CETN1Q12798 172 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 STRN3Q13033 797 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 MKRN4PQ13434 485 aaPredicted RBP22.5■■□□□ 1.19
VPS28-209ENST00000528142 CAPSQ13938 189 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 DRAP1Q14919 205 aaPredicted RBP22.5■■□□□ 1.19
VPS28-209ENST00000528142 ENOX2Q16206 610 aaKnown RBP22.5■■□□□ 1.19
VPS28-209ENST00000528142 GPD1LQ8N335 351 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 BICD1Q96G01 975 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.5■■□□□ 1.19
VPS28-209ENST00000528142 CDC23Q9UJX2 597 aa22.5■■□□□ 1.19
VPS28-209ENST00000528142 K7ERI5 159 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 SNAI1O95863 264 aaPredicted RBP22.49■■□□□ 1.19
VPS28-209ENST00000528142 RFX1P22670 979 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 ANXA13P27216 316 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 SOX5P35711 763 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 LIG4P49917 911 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 AMPD2Q01433 879 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 CYP24A1Q07973 514 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 LAMC2Q13753 1193 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 IER5Q5VY09 327 aa22.49■■□□□ 1.19
VPS28-209ENST00000528142 SECISBP2LQ93073 1101 aaKnown RBP22.49■■□□□ 1.19
VPS28-209ENST00000528142 MACROD2A1Z1Q3 448 aa22.48■■□□□ 1.19
VPS28-209ENST00000528142 LRRIQ3A6PVS8 624 aaPredicted RBP22.48■■□□□ 1.19
VPS28-209ENST00000528142 GAS2O43903 313 aaKnown RBP22.48■■□□□ 1.19
VPS28-209ENST00000528142 ADCY3O60266 1144 aa22.48■■□□□ 1.19
VPS28-209ENST00000528142 FERP16591 822 aa22.48■■□□□ 1.19
VPS28-209ENST00000528142 MXI1P50539 228 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms