RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LRWD1Q9UFC0 647 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 HES2Q9Y543 173 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 MYH11P35749 1972 aa11.84□□□□□ -0.51
CD44-227ENST00000528086 HIDE1A8MVS5 230 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 INPPL1O15357 1258 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 IL9P15248 144 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 MUTP22033 750 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 KCNA5P22460 613 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 BCAR1P56945 870 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 PLCB3Q01970 1234 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 RESTQ13127 1097 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 ADAM15Q13444 863 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 GNL2Q13823 731 aaKnown RBP11.83□□□□□ -0.52
CD44-227ENST00000528086 PTPAQ15257 358 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 PTPROQ16827 1216 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 LEXMQ3ZCV2 418 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 RILPL1Q5EBL4 403 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 HYIQ5T013 277 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 TAS1R3Q7RTX0 852 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 LRRC43Q8N309 656 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 SNX29Q8TEQ0 813 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 MSLNLQ96KJ4 702 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 INO80BQ9C086 356 aaPredicted RBP11.83□□□□□ -0.52
CD44-227ENST00000528086 CLEC1BQ9P126 229 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 MYH15Q9Y2K3 1946 aa11.83□□□□□ -0.52
CD44-227ENST00000528086 A0A1B0GUA9 196 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 F8W810 466 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 INO80B-WBP1J3KQ70 363 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 PER2O15055 1255 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 EFEMP2O95967 443 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 GALTP07902 379 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 LAG3P18627 525 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 NCLP19338 710 aaKnown RBP11.82□□□□□ -0.52
CD44-227ENST00000528086 SYT1P21579 422 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 SLC11A1P49279 550 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 FAM187BQ17R55 369 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 NOMO2Q5JPE7 1267 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 NT5DC1Q5TFE4 455 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 EEF1DP3Q658K8 133 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 C1orf186Q6ZWK4 172 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 USP49Q70CQ1 688 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 CSRNP2Q9H175 543 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 NXF3Q9H4D5 531 aaKnown RBP11.82□□□□□ -0.52
CD44-227ENST00000528086 FOXD4L1Q9NU39 408 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 MTMR6Q9Y217 621 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 IPPQ9Y573 584 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.82□□□□□ -0.52
CD44-227ENST00000528086 CLIC4Q9Y696 253 aa11.82□□□□□ -0.52
CD44-227ENST00000528086 ARHGEF35A5YM69 484 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 VWA3AA6NCI4 1184 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 GRXCR2A6NFK2 248 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 H3BQV1 296 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 LAD1O00515 517 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 HOXA2O43364 376 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 EYA4O95677 639 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 IGFBP6P24592 240 aaPredicted RBP11.81□□□□□ -0.52
CD44-227ENST00000528086 UBE3AQ05086 875 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 TMEM119Q4V9L6 283 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 ARSHQ5FYA8 562 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 RINT1Q6NUQ1 792 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 DTHD1Q6ZMT9 781 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 PPP4R3CPQ6ZMV5 832 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 RBM23Q86U06 439 aaKnown RBP11.81□□□□□ -0.52
CD44-227ENST00000528086 MCPH1Q8NEM0 835 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 ERMNQ8TAM6 284 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 MRPS27Q92552 414 aaKnown RBP11.81□□□□□ -0.52
CD44-227ENST00000528086 ZFP42Q96MM3 310 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 UHRF1Q96T88 793 aaPredicted RBP11.81□□□□□ -0.52
CD44-227ENST00000528086 PLIN2Q99541 437 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 IGFLR1Q9H665 355 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 TLR9Q9NR96 1032 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 BLOC1S4Q9NUP1 217 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 CLDND1Q9NY35 253 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 LZTS1Q9Y250 596 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 INPP5FQ9Y2H2 1132 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 PCDHB12Q9Y5F1 795 aa11.81□□□□□ -0.52
CD44-227ENST00000528086 LRRIQ4A6NIV6 560 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 ABLIM1O14639 778 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 MEFVO15553 781 aaPredicted RBP11.8□□□□□ -0.52
CD44-227ENST00000528086 AXLP30530 894 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 NRIP1P48552 1158 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 RAB27AP51159 221 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 SLC12A3P55017 1021 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 DSC1Q08554 894 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 TFDP1Q14186 410 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 SF3A1Q15459 793 aaKnown RBP11.8□□□□□ -0.52
CD44-227ENST00000528086 CLUL1Q15846 466 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 DUSP6Q16828 381 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 SPOUT1Q5T280 376 aaKnown RBP11.8□□□□□ -0.52
CD44-227ENST00000528086 ARL6IP4Q66PJ3 421 aaKnown RBP11.8□□□□□ -0.52
CD44-227ENST00000528086 HAUS3Q68CZ6 603 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 THNSL1Q8IYQ7 743 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 EFHBQ8N7U6 833 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 SYMPKQ92797 1274 aaKnown RBP11.8□□□□□ -0.52
CD44-227ENST00000528086 SNX21Q969T3 373 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 INTS4Q96HW7 963 aaKnown RBP11.8□□□□□ -0.52
CD44-227ENST00000528086 ZNF558Q96NG5 402 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 GAD1Q99259 594 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 PDZD7Q9H5P4 517 aa11.8□□□□□ -0.52
CD44-227ENST00000528086 RSAD1Q9HA92 442 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms