RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 AUTS2Q8WXX7 1259 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 TMEM176AQ96HP8 235 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 GPR20Q99678 358 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 MENTQ9BUN1 341 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 KRTAP4-7Q9BYR0 210 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 ING3Q9NXR8 418 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 SLC5A4Q9NY91 659 aa6.46□□□□□ -1.38
CD44-223ENST00000526553 UBE2QL1A1L167 161 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 TMEM127O75204 238 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 PRKD1Q15139 912 aaPredicted RBP6.45□□□□□ -1.38
CD44-223ENST00000526553 KCNK18Q7Z418 384 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 D2HGDHQ8N465 521 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 ADOQ96SZ5 270 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 ENKD1Q9H0I2 346 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 DPP7Q9UHL4 492 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 EDARQ9UNE0 448 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 SHROOM4Q9ULL8 1493 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 WASHC2AQ641Q2 1341 aa6.45□□□□□ -1.38
CD44-223ENST00000526553 CDK11BP21127 795 aaKnown RBP6.44□□□□□ -1.38
CD44-223ENST00000526553 GPR3P46089 330 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 NPEPPSP55786 919 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 HHEXQ03014 270 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 MUM1Q2TAK8 710 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 C19orf54Q5BKX5 351 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 MFSD5Q6N075 450 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 FAM111BQ6SJ93 734 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 ZNF808Q8N4W9 903 aaPredicted RBP6.44□□□□□ -1.38
CD44-223ENST00000526553 MSL3Q8N5Y2 521 aaKnown RBP6.44□□□□□ -1.38
CD44-223ENST00000526553 CNTD1Q8N815 330 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 TGFBRAP1Q8WUH2 860 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 KRTAP9-3Q9BYQ3 159 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 QRSL1Q9H0R6 528 aaKnown RBP6.44□□□□□ -1.38
CD44-223ENST00000526553 CCM2LQ9NUG4 571 aaPredicted RBP6.44□□□□□ -1.38
CD44-223ENST00000526553 MYRFQ9Y2G1 1151 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 SH3BP1Q9Y3L3 701 aa6.44□□□□□ -1.38
CD44-223ENST00000526553 CDKN1CP49918 316 aaPredicted RBP6.43□□□□□ -1.38
CD44-223ENST00000526553 KLF1Q13351 362 aaPredicted RBP6.43□□□□□ -1.38
CD44-223ENST00000526553 ANO4Q32M45 955 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 PALM2Q8IXS6 379 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 ANKRD35Q8N283 1001 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 ZCRB1Q8TBF4 217 aaKnown RBP6.43□□□□□ -1.38
CD44-223ENST00000526553 TSPEARQ8WU66 669 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 ARL8AQ96BM9 186 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 BRINP2Q9C0B6 783 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 TLR9Q9NR96 1032 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 NCDNQ9UBB6 729 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 COL4A3BPQ9Y5P4 624 aa6.43□□□□□ -1.38
CD44-223ENST00000526553 CYP27B1O15528 508 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 SRSF2Q01130 221 aaKnown RBP6.42□□□□□ -1.38
CD44-223ENST00000526553 DUSP2Q05923 314 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 UBE3CQ15386 1083 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 TOR2AQ5JU69 321 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 FKBP15Q5T1M5 1219 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 GJC2Q5T442 439 aaPredicted RBP6.42□□□□□ -1.38
CD44-223ENST00000526553 DBX2Q6ZNG2 339 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 PRPF38AQ8NAV1 312 aaKnown RBP6.42□□□□□ -1.38
CD44-223ENST00000526553 SNX33Q8WV41 574 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 IFT122Q9HBG6 1241 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 PCDH12Q9NPG4 1184 aa6.42□□□□□ -1.38
CD44-223ENST00000526553 TRIM75PA6NK02 468 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 CAPN14A8MX76 684 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 ALG1L2C9J202 215 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 PRAMEF4O60810 478 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 GYPEP15421 78 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 CTSSP25774 331 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 ACRV1P26436 265 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 MTNR1BP49286 362 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 SLC5A3P53794 718 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 CDK17Q00537 523 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 ADRM1Q16186 407 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 SPDYAQ5MJ70 313 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 SPTY2D1Q68D10 685 aaPredicted RBP6.41□□□□□ -1.38
CD44-223ENST00000526553 BTNL9Q6UXG8 535 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 SGMS1Q86VZ5 419 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 GLB1L3Q8NCI6 653 aaPredicted RBP6.41□□□□□ -1.38
CD44-223ENST00000526553 FATE1Q969F0 183 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 MIEF2Q96C03 454 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 ZNF512Q96ME7 567 aaPredicted RBP6.41□□□□□ -1.38
CD44-223ENST00000526553 TRIM8Q9BZR9 551 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 DNAJC28Q9NX36 388 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 SCOCQ9UIL1 159 aa6.41□□□□□ -1.38
CD44-223ENST00000526553 PHF2O75151 1096 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 HIBADHP31937 336 aaKnown RBP6.4□□□□□ -1.38
CD44-223ENST00000526553 CASRP41180 1078 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 GUCY2FP51841 1108 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 ELAVL1Q15717 326 aaKnown RBP6.4□□□□□ -1.38
CD44-223ENST00000526553 ZXDCQ2QGD7 858 aaPredicted RBP6.4□□□□□ -1.38
CD44-223ENST00000526553 INAVAQ3KP66 663 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 ABHD15Q6UXT9 468 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 FAM177A1Q8N128 213 aaPredicted RBP6.4□□□□□ -1.38
CD44-223ENST00000526553 SSH1Q8WYL5 1049 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 IL17RAQ96F46 866 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 ACE2Q9BYF1 805 aaPredicted RBP6.4□□□□□ -1.38
CD44-223ENST00000526553 KRTAP4-9Q9BYQ8 210 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 AURKAIP1Q9NWT8 199 aaPredicted RBP6.4□□□□□ -1.38
CD44-223ENST00000526553 GIT1Q9Y2X7 761 aa6.4□□□□□ -1.38
CD44-223ENST00000526553 RPTORQ8N122 1335 aa6.4□□□□□ -1.39
CD44-223ENST00000526553 KRTAP23-1A1A580 65 aa6.39□□□□□ -1.39
CD44-223ENST00000526553 IPO13O94829 963 aaKnown RBP6.39□□□□□ -1.39
CD44-223ENST00000526553 GASTP01350 101 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms