RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 CDCA5Q96FF9 252 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 CLMNQ96JQ2 1002 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 MFSD14AQ96MC6 490 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 RHOXF2Q9BQY4 288 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 FUT8Q9BYC5 575 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 NIFKQ9BYG3 293 aaKnown RBP17.3■□□□□ 0.36
USH1C-204ENST00000526313 ASCC2Q9H1I8 757 aaPredicted RBP17.3■□□□□ 0.36
USH1C-204ENST00000526313 CCDC172P0C7W6 258 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 SNRNP35Q16560 246 aaKnown RBP17.3■□□□□ 0.36
USH1C-204ENST00000526313 BRDTQ58F21 947 aaPredicted RBP17.3■□□□□ 0.36
USH1C-204ENST00000526313 TAS1R3Q7RTX0 852 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 MMGT1Q8N4V1 131 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 LNX1Q8TBB1 728 aaPredicted RBP17.3■□□□□ 0.36
USH1C-204ENST00000526313 TMC2Q8TDI7 906 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 OTUD5Q96G74 571 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 TMEM117Q9H0C3 514 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 ZNF302Q9NR11 478 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 RNF14Q9UBS8 474 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 AGTPBP1Q9UPW5 1226 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 COQ4Q9Y3A0 265 aa17.3■□□□□ 0.36
USH1C-204ENST00000526313 GRID2IPA4D2P6 1211 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 H0YCG3 227 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 TGFB3P10600 412 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 SCP2P22307 547 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 GCLMP48507 274 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 VSNL1P62760 191 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 LONRF2Q1L5Z9 754 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 CBWD2Q8IUF1 395 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 PARD3BQ8TEW8 1205 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 UBXN6Q9BZV1 441 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 DHX33Q9H6R0 707 aaKnown RBP17.29■□□□□ 0.36
USH1C-204ENST00000526313 GSTTP1A0A1W2PQM5 241 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 FOXN3O00409 490 aaPredicted RBP17.29■□□□□ 0.36
USH1C-204ENST00000526313 NCK2O43639 380 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 SASH3O75995 380 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 FARP2O94887 1054 aaPredicted RBP17.29■□□□□ 0.36
USH1C-204ENST00000526313 SLC25A27O95847 323 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 OATP04181 439 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 GARTP22102 1010 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 UBA1P22314 1058 aaKnown RBP17.29■□□□□ 0.36
USH1C-204ENST00000526313 PLA2G4AP47712 749 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 IRX3P78415 501 aaPredicted RBP17.29■□□□□ 0.36
USH1C-204ENST00000526313 SP4Q02446 784 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 SEPT14Q6ZU15 432 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 PCYT2Q99447 389 aa17.29■□□□□ 0.36
USH1C-204ENST00000526313 LRRC37A2A6NM11 1700 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 MAP2K7O14733 419 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 H2AFZP0C0S5 128 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 NF2P35240 595 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 NAP1L1P55209 391 aaKnown RBP17.28■□□□□ 0.36
USH1C-204ENST00000526313 IFI16Q16666 785 aaKnown RBP17.28■□□□□ 0.36
USH1C-204ENST00000526313 H2AFVQ71UI9 128 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 NCAPG2Q86XI2 1143 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 LRRC57Q8N9N7 239 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 IFT74Q96LB3 600 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 POLR3FQ9H1D9 316 aaPredicted RBP17.28■□□□□ 0.36
USH1C-204ENST00000526313 L1RE1Q9UN81 338 aa17.28■□□□□ 0.36
USH1C-204ENST00000526313 GOLGA8IPA6NC78 632 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 GOLGA8JA6NMD2 632 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 ERLIN1O75477 346 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 GTF2H1P32780 548 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 COPB2P35606 906 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 MXI1P50539 228 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 EMC2Q15006 297 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 TARBP2Q15633 366 aaKnown RBP17.27■□□□□ 0.36
USH1C-204ENST00000526313 MTERF2Q49AM1 385 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 MOB2Q70IA6 237 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 SLFN11Q7Z7L1 901 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 ARHGEF19Q8IW93 802 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 MSL3Q8N5Y2 521 aaKnown RBP17.27■□□□□ 0.36
USH1C-204ENST00000526313 SPATA4Q8NEY3 305 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 CAGE1Q8TC20 777 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 AFAP1L1Q8TED9 768 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 PORCNQ9H237 461 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 R3HDMLQ9H3Y0 253 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 ABCB6Q9NP58 842 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 UBE2TQ9NPD8 197 aaPredicted RBP17.27■□□□□ 0.36
USH1C-204ENST00000526313 RBPJLQ9UBG7 517 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 STYXL1Q9Y6J8 313 aa17.27■□□□□ 0.36
USH1C-204ENST00000526313 SOCS7O14512 581 aa17.27■□□□□ 0.35
USH1C-204ENST00000526313 LRRN2O75325 713 aa17.27■□□□□ 0.35
USH1C-204ENST00000526313 ARL2P36404 184 aa17.27■□□□□ 0.35
USH1C-204ENST00000526313 NEDD9Q14511 834 aa17.27■□□□□ 0.35
USH1C-204ENST00000526313 U2AF1L4Q8WU68 220 aaKnown RBP17.27■□□□□ 0.35
USH1C-204ENST00000526313 FGD4Q96M96 766 aa17.27■□□□□ 0.35
USH1C-204ENST00000526313 DNAJC25-GNG10A0A024R161 153 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 LRRIQ3A6PVS8 624 aaPredicted RBP17.26■□□□□ 0.35
USH1C-204ENST00000526313 CES2O00748 559 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 SORBS3O60504 671 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 GPC3P51654 580 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 KRT39Q6A163 491 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 DPY19L2Q6NUT2 758 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 TPCN2Q8NHX9 752 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 SAAL1Q96ER3 474 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 TMEM8AQ9HCN3 771 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 TXNRD2Q9NNW7 524 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 PIGRP01833 764 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 MCM3P25205 808 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 EPHX2P34913 555 aa17.26■□□□□ 0.35
USH1C-204ENST00000526313 GALCP54803 685 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms