RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PIEZO1Q92508 2521 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 MED24O75448 989 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 STBD1O95210 358 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 YEATS4O95619 227 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 ATF7P17544 494 aaPredicted RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 FGFR4P22455 802 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 LONP1P36776 959 aaKnown RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 NASPP49321 788 aaPredicted RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 CEBPZQ03701 1054 aaKnown RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 KRT17Q04695 432 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 CBX2Q14781 532 aaPredicted RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 TARBP2Q15633 366 aaKnown RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 IL17AQ16552 155 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 XKR9Q5GH70 373 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 CLLU1OSQ5K130 101 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 PLA2G4FQ68DD2 849 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 LLGL2Q6P1M3 1020 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 LRRC55Q6ZSA7 311 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 ANO5Q75V66 913 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 CATSPER3Q86XQ3 398 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 EXOC8Q8IYI6 725 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 EDAQ92838 391 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 RPGRIP1Q96KN7 1286 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 CEP170P1Q96L14 293 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 FBXL18Q96ME1 805 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 NACC1Q96RE7 527 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 MRPL9Q9BYD2 267 aaKnown RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 NGRNQ9NPE2 291 aaKnown RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 CYP26B1Q9NR63 512 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 ANKEF1Q9NU02 776 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 DACT1Q9NYF0 836 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 WRAP73Q9P2S5 460 aaPredicted RBP11.26□□□□□ -0.61
VPS28-204ENST00000526054 CFAP45Q9UL16 551 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 TCHHQ07283 1943 aa11.26□□□□□ -0.61
VPS28-204ENST00000526054 KMT2EQ8IZD2 1858 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 A0A0U1RQF3 1178 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 TMEM150BA6NC51 233 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 HIDE1A8MVS5 230 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 SLC26A4O43511 780 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 SPATA31C1P0DKV0 1188 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 XRCC6P12956 609 aaKnown RBP eCLIP11.25□□□□□ -0.617e-6■□□□□ 8.8
VPS28-204ENST00000526054 SFPQP23246 707 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS28-204ENST00000526054 MARCKSP29966 332 aaPredicted RBP11.25□□□□□ -0.61
VPS28-204ENST00000526054 RFC5P40937 340 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 POLGP54098 1239 aaPredicted RBP11.25□□□□□ -0.61
VPS28-204ENST00000526054 NHLH1Q02575 133 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 DRP2Q13474 957 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 SLC39A14Q15043 492 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 FOXD4L6Q3SYB3 417 aaPredicted RBP11.25□□□□□ -0.61
VPS28-204ENST00000526054 ANKRD54Q6NXT1 300 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 POTEGQ6S5H5 508 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 FOXD4L3Q6VB84 417 aaPredicted RBP11.25□□□□□ -0.61
VPS28-204ENST00000526054 HELQQ8TDG4 1101 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 SLC7A3Q8WY07 619 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 SUSD6Q92537 303 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 CDK5RAP3Q96JB5 506 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 GCOM2Q9BZD3 368 aaPredicted RBP11.25□□□□□ -0.61
VPS28-204ENST00000526054 NT5C3AQ9H0P0 336 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 SPG21Q9NZD8 308 aa11.25□□□□□ -0.61
VPS28-204ENST00000526054 TMEM221A6NGB7 291 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 PP2D1A8MPX8 630 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 M0R296 226 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 SPTLC2O15270 562 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 GAS2O43903 313 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 CSDE1O75534 798 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 EOMESO95936 686 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 CA8P35219 290 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 TXLNAP40222 546 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 UBA7P41226 1012 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 DNM2P50570 870 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 NPEPPSP55786 919 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 KRT85P78386 507 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 KCNC3Q14003 757 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 SMC1AQ14683 1233 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 TMEM184AQ6ZMB5 413 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 TRIM67Q6ZTA4 783 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 TMC7Q7Z402 723 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 ZNF598Q86UK7 904 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 CABP7Q86V35 215 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 ALYREFQ86V81 257 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 SUGP1Q8IWZ8 645 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 SLC39A11Q8N1S5 342 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 KCTD17Q8N5Z5 321 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 KRI1Q8N9T8 703 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 LINC00301Q8NCQ3 95 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 RASSF8Q8NHQ8 419 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 KCNG4Q8TDN1 519 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 CASP10Q92851 521 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 CALML4Q96GE6 196 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 SH2D3AQ9BRG2 576 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 APOL5Q9BWW9 433 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 TFIP11Q9UBB9 837 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 FBXO2Q9UK22 296 aaPredicted RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 DBR1Q9UK59 544 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 KIAA1024Q9UPX6 916 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 PIN4Q9Y237 131 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 ZDHHC9Q9Y397 364 aa11.24□□□□□ -0.61
VPS28-204ENST00000526054 SRPRBQ9Y5M8 271 aaKnown RBP11.24□□□□□ -0.61
VPS28-204ENST00000526054 A0A087WZ62 844 aa11.23□□□□□ -0.61
VPS28-204ENST00000526054 ARHGEF35A5YM69 484 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms