RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.85■■□□□ 1.25
CD44-222ENST00000526025 ENPP3O14638 875 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 KINO60870 393 aaKnown RBP22.85■■□□□ 1.25
CD44-222ENST00000526025 NR1I2O75469 434 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 AMHP03971 560 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 PRKCBP05771 671 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 LIG1P18858 919 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 FGFR4P22455 802 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 HOXA11P31270 313 aaPredicted RBP22.85■■□□□ 1.25
CD44-222ENST00000526025 EHHADHQ08426 723 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 COASYQ13057 564 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 CUL4BQ13620 913 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 TPRNQ4KMQ1 711 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 HAUS6Q7Z4H7 955 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 SFR1Q86XK3 245 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 HVCN1Q96D96 273 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 ZHX3Q9H4I2 956 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 LMBRD1Q9NUN5 540 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 CXXC1Q9P0U4 656 aaPredicted RBP22.85■■□□□ 1.25
CD44-222ENST00000526025 HOOK1Q9UJC3 728 aaKnown RBP22.85■■□□□ 1.25
CD44-222ENST00000526025 PIN4Q9Y237 131 aaKnown RBP22.85■■□□□ 1.25
CD44-222ENST00000526025 SLC4A7Q9Y6M7 1214 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 TRIOBPQ9H2D6 2365 aa22.85■■□□□ 1.25
CD44-222ENST00000526025 DENND3A2RUS2 1198 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 ZBBXA8MT70 800 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 MGEA5O60502 916 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 FAM189BP81408 668 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 GTF2BQ00403 316 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 HERC4Q5GLZ8 1057 aaPredicted RBP22.84■■□□□ 1.25
CD44-222ENST00000526025 NOTUMQ6P988 496 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 SLC24A5Q71RS6 500 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 RTN4RL1Q86UN2 441 aaPredicted RBP22.84■■□□□ 1.25
CD44-222ENST00000526025 ADAM2Q99965 735 aa22.84■■□□□ 1.25
CD44-222ENST00000526025 COLQQ9Y215 455 aaPredicted RBP22.84■■□□□ 1.25
CD44-222ENST00000526025 A0A1B0GUA9 196 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 C9IYK1 514 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 K7ENM7 598 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 PPP1R37O75864 691 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 SKIP12755 728 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 ARF4P18085 180 aaPredicted RBP22.83■■□□□ 1.25
CD44-222ENST00000526025 SARSP49591 514 aaKnown RBP22.83■■□□□ 1.25
CD44-222ENST00000526025 RAB27AP51159 221 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 DPYDQ12882 1025 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 STRN3Q13033 797 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 PRPF4BQ13523 1007 aaKnown RBP22.83■■□□□ 1.25
CD44-222ENST00000526025 TAS1R3Q7RTX0 852 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 ZNF720Q7Z2F6 126 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 GRAMD1CQ8IYS0 662 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 STRA6Q9BX79 667 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 BLZF1Q9H2G9 400 aa22.83■■□□□ 1.25
CD44-222ENST00000526025 ELAC1Q9H777 363 aaKnown RBP22.83■■□□□ 1.25
CD44-222ENST00000526025 GBF1Q92538 1859 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 COL4A6Q14031 1691 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 KLRC4O43908 158 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 POSTNQ15063 836 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 ZPBP2Q6X784 338 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 CRIPAKQ8N1N5 446 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 TOP1MTQ969P6 601 aa22.82■■□□□ 1.24
CD44-222ENST00000526025 MRPL4Q9BYD3 311 aaKnown RBP22.82■■□□□ 1.24
CD44-222ENST00000526025 MRPL44Q9H9J2 332 aaKnown RBP22.82■■□□□ 1.24
CD44-222ENST00000526025 A0A0U1RQF3 1178 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 N4BP3O15049 544 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 ZNF623O75123 536 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 PSMD2Q13200 908 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 LRIT3Q3SXY7 679 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 TWF2Q6IBS0 349 aaKnown RBP22.81■■□□□ 1.24
CD44-222ENST00000526025 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.81■■□□□ 1.24
CD44-222ENST00000526025 STXBP4Q6ZWJ1 553 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 NPAS4Q8IUM7 802 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 TBX20Q9UMR3 447 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 PCDHB13Q9Y5F0 798 aa22.81■■□□□ 1.24
CD44-222ENST00000526025 B4GALT5O43286 388 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 PIGRP01833 764 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 ATP2A2P16615 1042 aaKnown RBP22.8■■□□□ 1.24
CD44-222ENST00000526025 CASP1P29466 404 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 NMT1P30419 496 aaKnown RBP22.8■■□□□ 1.24
CD44-222ENST00000526025 DEFB103AP81534 67 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 KCNB1Q14721 858 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 FAM26FQ5R3K3 315 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 NT5DC1Q5TFE4 455 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 SLC27A1Q6PCB7 646 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 APBB1IPQ7Z5R6 666 aaPredicted RBP22.8■■□□□ 1.24
CD44-222ENST00000526025 MAP4K3Q8IVH8 894 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 RSPH1Q8WYR4 309 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 CCDC47Q96A33 483 aaKnown RBP22.8■■□□□ 1.24
CD44-222ENST00000526025 TMEM161AQ9NX61 479 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 TNFSF13BQ9Y275 285 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 UBE4BO95155 1302 aa22.8■■□□□ 1.24
CD44-222ENST00000526025 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.79■■□□□ 1.24
CD44-222ENST00000526025 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.79■■□□□ 1.24
CD44-222ENST00000526025 EIF3DO15371 548 aaKnown RBP eCLIP22.79■■□□□ 1.24
CD44-222ENST00000526025 EOMESO95936 686 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 RPN1P04843 607 aaKnown RBP22.79■■□□□ 1.24
CD44-222ENST00000526025 EDN1P05305 212 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 PRR29P0C7W0 189 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 STAG3L1P0CL83 205 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 UBXN11Q5T124 520 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 ATF7IP2Q5U623 682 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 HERC6Q8IVU3 1022 aa22.79■■□□□ 1.24
CD44-222ENST00000526025 MYOCDQ8IZQ8 938 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms