RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 FTLP02792 175 aaPredicted RBP9.22□□□□□ -0.93
LSM1-202ENST00000520286 GLI1P08151 1106 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 CNN3Q15417 329 aaKnown RBP9.22□□□□□ -0.93
LSM1-202ENST00000520286 WDR72Q3MJ13 1102 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 THEMIS2Q5TEJ8 643 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 GRAMD4Q6IC98 578 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 ATG4DQ86TL0 474 aaPredicted RBP9.22□□□□□ -0.93
LSM1-202ENST00000520286 GPR156Q8NFN8 814 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 KLHDC4Q8TBB5 520 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 C7orf25Q9BPX7 421 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 ZNF552Q9H707 407 aaPredicted RBP9.22□□□□□ -0.93
LSM1-202ENST00000520286 KCND1Q9NSA2 647 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 POLR3BQ9NW08 1133 aaPredicted RBP9.22□□□□□ -0.93
LSM1-202ENST00000520286 SAE1Q9UBE0 346 aaPredicted RBP9.22□□□□□ -0.93
LSM1-202ENST00000520286 POLHQ9Y253 713 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 NR2E3Q9Y5X4 410 aa9.22□□□□□ -0.93
LSM1-202ENST00000520286 RPLP2P05387 115 aaKnown RBP9.21□□□□□ -0.94
LSM1-202ENST00000520286 PEX2P28328 305 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 ALDH5A1P51649 535 aaPredicted RBP9.21□□□□□ -0.94
LSM1-202ENST00000520286 MAP2K6P52564 334 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 TARBP2Q15633 366 aaKnown RBP9.21□□□□□ -0.94
LSM1-202ENST00000520286 ZRSR2Q15696 482 aaKnown RBP9.21□□□□□ -0.94
LSM1-202ENST00000520286 GRAMD1BQ3KR37 738 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 CCDC157Q569K6 752 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 ZNF605Q86T29 641 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 TTC7BQ86TV6 843 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 STK32CQ86UX6 486 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 DRC7Q8IY82 874 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 PPP1R14CQ8TAE6 165 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 SMARCC2Q8TAQ2 1214 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 RGMAQ96B86 450 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 ZSWIM3Q96MP5 696 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 CLIC6Q96NY7 704 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 APOL5Q9BWW9 433 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 PLCB1Q9NQ66 1216 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 DNAI1Q9UI46 699 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 PCDHB1Q9Y5F3 818 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 IRS2Q9Y4H2 1338 aa9.21□□□□□ -0.94
LSM1-202ENST00000520286 FOSP01100 380 aaPredicted RBP9.2□□□□□ -0.94
LSM1-202ENST00000520286 ADCY8P40145 1251 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 ITGA1P56199 1179 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 SRSF3P84103 164 aaKnown RBP9.2□□□□□ -0.94
LSM1-202ENST00000520286 ADAM9Q13443 819 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 C4orf46Q504U0 113 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 OTOP2Q7RTS6 562 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 FAM129CQ86XR2 697 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 ENAHQ8N8S7 591 aaPredicted RBP9.2□□□□□ -0.94
LSM1-202ENST00000520286 VPS37AQ8NEZ2 397 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 PCDH18Q9HCL0 1135 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 PTPRHQ9HD43 1115 aa9.2□□□□□ -0.94
LSM1-202ENST00000520286 SLC16A6O15403 523 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 AKR1B10O60218 316 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 TMEM127O75204 238 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 ATF2P15336 505 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 MEF2AQ02078 507 aaPredicted RBP9.19□□□□□ -0.94
LSM1-202ENST00000520286 CD69Q07108 199 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 SEPT2Q15019 361 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 KCNMB1Q16558 191 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 SWSAP1Q6NVH7 229 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 MAEAQ7L5Y9 396 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 B3GNT8Q7Z7M8 397 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 RHOT1Q8IXI2 618 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 BCL6BQ8N143 479 aaPredicted RBP9.19□□□□□ -0.94
LSM1-202ENST00000520286 NSUN6Q8TEA1 469 aaKnown RBP9.19□□□□□ -0.94
LSM1-202ENST00000520286 LRTOMTQ8WZ04 291 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 CDK5RAP3Q96JB5 506 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 OSBPL6Q9BZF3 934 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 RTEL1Q9NZ71 1219 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.19□□□□□ -0.94
LSM1-202ENST00000520286 DMTF1Q9Y222 760 aa9.19□□□□□ -0.94
LSM1-202ENST00000520286 A0A0G2JNJ9 132 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 A0A1W2PR48 441 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 CFAP69A5D8W1 941 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 MGEA5O60502 916 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 LY86O95711 162 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 ZKSCAN1P17029 563 aaPredicted RBP9.18□□□□□ -0.94
LSM1-202ENST00000520286 CTSSP25774 331 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 NCKAP1LP55160 1127 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 IFIT5Q13325 482 aaKnown RBP9.18□□□□□ -0.94
LSM1-202ENST00000520286 MAN2A1Q16706 1144 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 FAM83BQ5T0W9 1011 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 TMEM200BQ69YZ2 307 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 XRRA1Q6P2D8 792 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 C1orf228Q6PIY5 440 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 ZSWIM9Q86XI8 627 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 RPTORQ8N122 1335 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 KRT78Q8N1N4 520 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 ACRBPQ8NEB7 543 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.18□□□□□ -0.94
LSM1-202ENST00000520286 WRNIP1Q96S55 665 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 TBCBQ99426 244 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 GORASP1Q9BQQ3 440 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 NUP62CLQ9H1M0 184 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 SIRT5Q9NXA8 310 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 Q9UFV3 132 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 CROTQ9UKG9 612 aa9.18□□□□□ -0.94
LSM1-202ENST00000520286 A0A088AWK7 358 aa9.17□□□□□ -0.94
LSM1-202ENST00000520286 N4BP3O15049 544 aa9.17□□□□□ -0.94
LSM1-202ENST00000520286 SGTAO43765 313 aa9.17□□□□□ -0.94
LSM1-202ENST00000520286 FSBPO95073 299 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms