RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CNOT6Q9ULM6 557 aaKnown RBP8.99□□□□□ -0.97
SDCBP-208ENST00000520228 NOP58Q9Y2X3 529 aaKnown RBP8.99□□□□□ -0.97
SDCBP-208ENST00000520228 PEAK1Q9H792 1746 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 IGSF1Q8N6C5 1336 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 LTN1O94822 1766 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 CDKN1CP49918 316 aaPredicted RBP8.98□□□□□ -0.97
SDCBP-208ENST00000520228 LINC00310P59036 64 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 TERF2Q15554 542 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 SKIDA1Q1XH10 827 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 ATP13A4Q4VNC1 1196 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 VWA3BQ502W6 1294 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 SULT6B1Q6IMI4 303 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 CNKSR3Q6P9H4 555 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 C11orf74Q86VG3 221 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 CILP2Q8IUL8 1156 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 TTLL6Q8N841 843 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 WDR66Q8TBY9 1149 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 DACT3Q96B18 629 aaPredicted RBP8.98□□□□□ -0.97
SDCBP-208ENST00000520228 ZBTB8AQ96BR9 441 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 CFAP53Q96M91 514 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 AMNQ9BXJ7 453 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 TOMM22Q9NS69 142 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 SPATA6Q9NWH7 488 aaPredicted RBP8.98□□□□□ -0.97
SDCBP-208ENST00000520228 PMF1-BGLAPU3KQ54 211 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 PCDH11XQ9BZA7 1347 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 PCDH11YQ9BZA8 1340 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 BRWD3Q6RI45 1802 aa8.98□□□□□ -0.97
SDCBP-208ENST00000520228 PARP4Q9UKK3 1724 aaKnown RBP8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PLSCR1O15162 318 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 CYP27B1O15528 508 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 CDK11BP21127 795 aaKnown RBP8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PPP2R1AP30153 589 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 TXKP42681 527 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 RAP1GAPP47736 663 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 LRRC32Q14392 662 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 KCNA10Q16322 511 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PLEKHO1Q53GL0 409 aaPredicted RBP8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PRR31Q5SQ13 230 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 RNF219Q5W0B1 726 aaPredicted RBP8.97□□□□□ -0.97
SDCBP-208ENST00000520228 SAPCD2Q86UD0 394 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PASD1Q8IV76 773 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PRPF38AQ8NAV1 312 aaKnown RBP8.97□□□□□ -0.97
SDCBP-208ENST00000520228 ATL2Q8NHH9 583 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PWWP2AQ96N64 755 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 INCENPQ9NQS7 918 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 ARHGAP28Q9P2N2 729 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 LRRC37A3O60309 1634 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 PARD3Q8TEW0 1356 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 NCAPD2Q15021 1401 aa8.97□□□□□ -0.97
SDCBP-208ENST00000520228 RGPD5Q99666 1765 aa8.96□□□□□ -0.97
SDCBP-208ENST00000520228 PRAMEF22A3QJZ6 481 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 IL18BPO95998 194 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 C8AP07357 584 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 SMAD4Q13485 552 aaKnown RBP8.96□□□□□ -0.98
SDCBP-208ENST00000520228 AMOTQ4VCS5 1084 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 PRAMEF18Q5VWM3 479 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 RPUSD2Q8IZ73 545 aaKnown RBP8.96□□□□□ -0.98
SDCBP-208ENST00000520228 ZNF610Q8N9Z0 462 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 SLC5A5Q92911 643 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 UCKL1Q9NWZ5 548 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 GALNT8Q9NY28 637 aa8.96□□□□□ -0.98
SDCBP-208ENST00000520228 HMOX1P09601 288 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 IBSPP21815 317 aaPredicted RBP8.95□□□□□ -0.98
SDCBP-208ENST00000520228 ZNF124Q15973 351 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 ZNF385BQ569K4 471 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 BROXQ5VW32 411 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 ZZZ3Q8IYH5 903 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 IFNL2Q8IZJ0 200 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 HIPK4Q8NE63 616 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 ZSWIM3Q96MP5 696 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 CLIC6Q96NY7 704 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 KCND1Q9NSA2 647 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 ARHGAP20Q9P2F6 1191 aa8.95□□□□□ -0.98
SDCBP-208ENST00000520228 NPIPB6E9PJ23 425 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 RFXAPO00287 272 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 ULK1O75385 1050 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 COL6A1P12109 1028 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 PHKG2P15735 406 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 CD40P25942 277 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 LSP1P33241 339 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 ALDH6A1Q02252 535 aaKnown RBP8.94□□□□□ -0.98
SDCBP-208ENST00000520228 RALBP1Q15311 655 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 TXNRD1Q16881 649 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 PHF19Q5T6S3 580 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 ZNF530Q6P9A1 599 aaPredicted RBP8.94□□□□□ -0.98
SDCBP-208ENST00000520228 SPATS2Q86XZ4 545 aaKnown RBP8.94□□□□□ -0.98
SDCBP-208ENST00000520228 CLRN3Q8NCR9 226 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 RTF1Q92541 710 aaKnown RBP8.94□□□□□ -0.98
SDCBP-208ENST00000520228 WRNIP1Q96S55 665 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 FOXB1Q99853 325 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 NUDCQ9Y266 331 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 PLEKHG2Q9H7P9 1386 aa8.94□□□□□ -0.98
SDCBP-208ENST00000520228 FAM208AQ9UK61 1670 aaKnown RBP8.94□□□□□ -0.98
SDCBP-208ENST00000520228 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.93□□□□□ -0.98
SDCBP-208ENST00000520228 SH3D21A4FU49 640 aa8.93□□□□□ -0.98
SDCBP-208ENST00000520228 PRLP01236 227 aa8.93□□□□□ -0.98
SDCBP-208ENST00000520228 HSP90AB1P08238 724 aaKnown RBP8.93□□□□□ -0.98
SDCBP-208ENST00000520228 TMPRSS15P98073 1019 aa8.93□□□□□ -0.98
SDCBP-208ENST00000520228 ADCY1Q08828 1119 aa8.93□□□□□ -0.98
SDCBP-208ENST00000520228 STILQ15468 1287 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms