RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 RECQL4O94761 1208 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 CLK3P49761 638 aaKnown RBP4.44□□□□□ -1.7
CSMD3-209ENST00000519485 IQSEC1Q6DN90 963 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 Q6YL49 198 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 DDX53Q86TM3 631 aaKnown RBP4.44□□□□□ -1.7
CSMD3-209ENST00000519485 SCLYQ96I15 445 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 MAML3Q96JK9 1138 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 SLC46A2Q9BY10 475 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 C14orf93Q9H972 538 aaKnown RBP4.44□□□□□ -1.7
CSMD3-209ENST00000519485 POLR3BQ9NW08 1133 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-209ENST00000519485 NUDCQ9Y266 331 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 UACAQ9BZF9 1416 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 CNTLNQ9NXG0 1405 aa4.44□□□□□ -1.7
CSMD3-209ENST00000519485 LRRC9Q6ZRR7 1453 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 ARHGAP35Q9NRY4 1499 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 B4E1Z4 1266 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 EIF5BO60841 1220 aaKnown RBP4.43□□□□□ -1.7
CSMD3-209ENST00000519485 ASMTLO95671 621 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 CDK4P11802 303 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 ZNF37AP17032 561 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-209ENST00000519485 KCNA6P17658 529 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 LAG3P18627 525 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 GNAT2P19087 354 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 IGFALSP35858 605 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 KIR2DL3P43628 341 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 RGS3P49796 1198 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 IRF9Q00978 393 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 FAM50AQ14320 339 aaKnown RBP4.43□□□□□ -1.7
CSMD3-209ENST00000519485 TIGD2Q4W5G0 525 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 FNDC3BQ53EP0 1204 aaKnown RBP4.43□□□□□ -1.7
CSMD3-209ENST00000519485 CXorf67Q86X51 503 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-209ENST00000519485 MB21D1Q8N884 522 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 BEND2Q8NDZ0 799 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 ARL8AQ96BM9 186 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 PGBD4Q96DM1 585 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 DYDC2Q96IM9 177 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 BOCQ9BWV1 1114 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 TRIM39Q9HCM9 518 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 RNF123Q5XPI4 1314 aa4.43□□□□□ -1.7
CSMD3-209ENST00000519485 ROCK2O75116 1388 aaKnown RBP4.42□□□□□ -1.7
CSMD3-209ENST00000519485 PPP1R12AO14974 1030 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-209ENST00000519485 KIAA0355O15063 1070 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 DAPK3O43293 454 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 GYPEP15421 78 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 ITGB6P18564 788 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 FLT3P36888 993 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 NPEPPSP55786 919 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 SLC6A3Q01959 620 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 SQSTM1Q13501 440 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 ARHGAP44Q17R89 818 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 TMEM177Q53S58 311 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 KRT40Q6A162 431 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 SLFN12LQ6IEE8 588 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 CPT1CQ8TCG5 803 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 ERCC4Q92889 916 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-209ENST00000519485 COQ10AQ96MF6 247 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 CLUHP3Q96NS8 147 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 OSBPL6Q9BZF3 934 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 ENKD1Q9H0I2 346 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 KCNH6Q9H252 994 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 PRDM13Q9H4Q3 707 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 PIF1Q9H611 641 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 KANSL2Q9H9L4 492 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 CYP4F11Q9HBI6 524 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 CABP5Q9NP86 173 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 SYBUQ9NX95 663 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 SAMD15Q9P1V8 674 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 MAGEL2Q9UJ55 1249 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 SORCS3Q9UPU3 1222 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 AQRO60306 1485 aaKnown RBP eCLIP4.42□□□□□ -1.7
CSMD3-209ENST00000519485 NCAPD3P42695 1498 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 NCOA2Q15596 1464 aa4.42□□□□□ -1.7
CSMD3-209ENST00000519485 FMN1Q68DA7 1419 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 CENPVL1A0A0U1RR11 272 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 TMEM200CA6NKL6 621 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 M0R2C6 588 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 RRP9O43818 475 aaKnown RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 ASLP04424 464 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 TYRP1P17643 537 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 RANGAP1P46060 587 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 MECP2P51608 486 aaKnown RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 BCAR1P56945 870 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 PAPD7Q5XG87 772 aaKnown RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 ZCCHC8Q6NZY4 707 aaKnown RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 ABHD17CQ6PCB6 329 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 UBE2R2Q712K3 238 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 PITHD1Q9GZP4 211 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 PRKRIP1Q9H875 184 aaPredicted RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 DKK2Q9UBU2 259 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 TNPO3Q9Y5L0 923 aaKnown RBP4.41□□□□□ -1.7
CSMD3-209ENST00000519485 CUX1P39880 1505 aa4.41□□□□□ -1.7
CSMD3-209ENST00000519485 HFM1A2PYH4 1435 aa4.4□□□□□ -1.7
CSMD3-209ENST00000519485 UBA6A0AVT1 1052 aaPredicted RBP4.4□□□□□ -1.71
CSMD3-209ENST00000519485 GAGE12BA1L429 117 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 GAGE12HA6NDE8 117 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 NRP1O14786 923 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 USP14P54578 494 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 KRTAP10-9P60411 292 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 BECN1Q14457 450 aa4.4□□□□□ -1.71
CSMD3-209ENST00000519485 TCEA2Q15560 299 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms