RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 FAM169BQ8N8A8 192 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPATA5Q8NB90 893 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SYT8Q8NBV8 401 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 HIPK4Q8NE63 616 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACRBPQ8NEB7 543 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SHCBP1Q8NEM2 672 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPHLN1Q8NEY8 458 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ADCY4Q8NFM4 1077 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 IL17REQ8NFR9 667 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PUM2Q8TB72 1066 aaKnown RBP eCLIP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC7A14Q8TBB6 771 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC25A43Q8WUT9 341 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 LEO1Q8WVC0 666 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATXN2LQ8WWM7 1075 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RSAD2Q8WXG1 361 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 JPH3Q8WXH2 748 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GJA10Q969M2 543 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM63Q969Q1 353 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SKA1Q96BD8 255 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC7A6OSQ96CW6 309 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERP27Q96DN0 273 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLIP3Q96DZ5 547 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 HOOK2Q96ED9 719 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEIL1Q96FI4 390 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NAF1Q96HR8 494 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 AJUBAQ96IF1 538 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CDK5RAP3Q96JB5 506 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MPP4Q96JB8 637 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TNIP3Q96KP6 325 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 YTHDC1Q96MU7 727 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCLT1Q96NL6 688 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 AIFM3Q96NN9 605 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR101Q96P66 508 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RBM15Q96T37 977 aaKnown RBP eCLIP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC9A7Q96T83 725 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NUP88Q99567 741 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTC1Q99614 292 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 MYD88Q99836 296 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCF25Q9BQ70 676 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GORASP1Q9BQQ3 440 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ORAI3Q9BRQ5 295 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF747Q9BV97 191 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TARS2Q9BW92 718 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 BTBD2Q9BX70 525 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RTFDC1Q9BY42 306 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM126AQ9BYI3 521 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RHOBTB2Q9BYZ6 727 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC13A1Q9BZW2 595 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCED1AQ9H1Q7 454 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 OR10A2Q9H208 303 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NKX2-4Q9H2Z4 354 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TOR3AQ9H497 397 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCIF1Q9H4Z3 704 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF703Q9H7S9 590 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 IFT22Q9H7X7 185 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SP110Q9HB58 689 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 IFT122Q9HBG6 1241 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 AS3MTQ9HBK9 375 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NCOA5Q9HCD5 579 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTPRHQ9HD43 1115 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CABP5Q9NP86 173 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NLRC4Q9NPP4 1024 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NRIP3Q9NQ35 241 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLCB1Q9NQ66 1216 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 KMT5AQ9NQR1 393 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDX21Q9NR30 783 aaKnown RBP eCLIP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RASSF1Q9NS23 344 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLHL11Q9NVR0 708 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLIC5Q9NZA1 410 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLEC1BQ9P126 229 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 LUZP4Q9P127 313 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 BTBD7Q9P203 1132 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRIT1Q9P2V4 623 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SAE1Q9UBE0 346 aaPredicted RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 GULP1Q9UBP9 304 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 Q9UFV3 132 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 IP6K2Q9UHH9 426 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 EIF2B4Q9UI10 523 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ST6GALNAC2Q9UJ37 374 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ASAP1Q9ULH1 1129 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NOB1Q9ULX3 412 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPT2Q9UMR5 302 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 OAZ3Q9UMX2 235 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NOL7Q9UMY1 257 aaKnown RBP0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 FRMD4BQ9Y2L6 1034 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 EMC9Q9Y3B6 208 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 RABGAP1Q9Y3P9 1069 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 DAAM1Q9Y4D1 1078 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 IPPQ9Y573 584 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 PCDHA2Q9Y5H9 948 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 NOX1Q9Y5S8 564 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 ATP23Q9Y6H3 246 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC30A1Q9Y6M5 507 aa0.7□□□□□ -2.3
RNU4-54P-201ENST00000516428 TNKSO95271 1327 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RPGRIP1LQ68CZ1 1315 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FRMPD2Q68DX3 1309 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ITIH6Q6UXX5 1313 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A1B0GVC2 190 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABHD14A-ACY1A0A1B0GW23 586 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A1W2PQU0 124 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms