RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ERGIC2Q96RQ1 377 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 SEC23AQ15436 765 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 STXBP2Q15833 593 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 LRRN4CLQ8ND94 238 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 ANKS1AQ92625 1134 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 FUT8Q9BYC5 575 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CELF4Q9BZC1 486 aaKnown RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 VIPAS39Q9H9C1 493 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 FNDC3AQ9Y2H6 1198 aaKnown RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 KIAA1210Q9ULL0 1709 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 XPOTO43592 962 aaKnown RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 H2AFXP16104 143 aaPredicted RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 KCNJ1P48048 391 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 TMPRSS15P98073 1019 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 ZNF568Q3ZCX4 644 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 GJB7Q6PEY0 223 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 TRIM42Q8IWZ5 723 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 KLHL11Q9NVR0 708 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 PPARGC1AQ9UBK2 798 aaKnown RBP13.53□□□□□ -0.24
USP53-209ENST00000514665 PRR12Q9ULL5 1215 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CAPN6Q9Y6Q1 641 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CASP7P55210 303 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 MYO1EQ12965 1108 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 STK33Q9BYT3 514 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 CCDC68Q9H2F9 335 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 KIAA1586Q9HCI6 787 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 APEX2Q9UBZ4 518 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 MAD2L2Q9UI95 211 aa13.53□□□□□ -0.24
USP53-209ENST00000514665 PALM3A6NDB9 673 aaPredicted RBP13.52□□□□□ -0.24
USP53-209ENST00000514665 NCF2P19878 526 aaPredicted RBP13.52□□□□□ -0.24
USP53-209ENST00000514665 IRAK1P51617 712 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 KIAA1755Q5JYT7 1200 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 HDAC11Q96DB2 347 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 ZIM3Q96PE6 472 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 CCT8L2Q96SF2 557 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 CYTH2Q99418 400 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 RBAKQ9NYW8 714 aaPredicted RBP13.52□□□□□ -0.24
USP53-209ENST00000514665 DIP2AQ14689 1571 aa13.52□□□□□ -0.24
USP53-209ENST00000514665 F5H423 210 aaPredicted RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 KRT37O76014 449 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 ABCD1P33897 745 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 CCNA1P78396 465 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 SURF1Q15526 300 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 EDRF1Q3B7T1 1238 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 IZUMO3Q5VZ72 239 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 PPM1NQ8N819 430 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 GBP7Q8N8V2 638 aaPredicted RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 C9orf72Q96LT7 481 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 POLR3FQ9H1D9 316 aaPredicted RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 WNT8AQ9H1J5 351 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 DMGDHQ9UI17 866 aaKnown RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 TLK1Q9UKI8 766 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 PCDHA10Q9Y5I2 948 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 AFF2P51816 1311 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 FAM205AQ6ZU69 1335 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 IQANK1A0A1B0GTG1 560 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 SPAG7O75391 227 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 TFRCP02786 760 aaKnown RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 COPB2P35606 906 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 PSMC1P62191 440 aaKnown RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 NAB2Q15742 525 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 RHOT1Q8IXI2 618 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 ZBED8Q8IZ13 594 aa13.52□□□□□ -0.25
USP53-209ENST00000514665 PSPC1Q8WXF1 523 aaKnown RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 ZBTB12Q9Y330 459 aaPredicted RBP13.52□□□□□ -0.25
USP53-209ENST00000514665 UBE4BO95155 1302 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 COPEO14579 308 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 LUC7L3O95232 432 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 MDH1P40925 334 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 ACOT2P49753 483 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 KRT17Q04695 432 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 NFX1Q12986 1120 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 PDIA2Q13087 525 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 MTM1Q13496 603 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 RBBP5Q15291 538 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 TTI2Q6NXR4 508 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 HERC5Q9UII4 1024 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 AGO2Q9UKV8 859 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 PFASO15067 1338 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 CFLARO15519 480 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 SLC4A1P02730 911 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 FGFR2P21802 821 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 C4orf50Q6ZRC1 276 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 CATSPER4Q7RTX7 472 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 ELOA2Q8IYF1 753 aaPredicted RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 FAM118BQ9BPY3 351 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 TRIM55Q9BYV6 548 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 ETNK1Q9HBU6 452 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 HSPBP1Q9NZL4 362 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 GPR75-ASB3A0A0A6YYF3 556 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 EIF4E1BA6NMX2 242 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 SPDYE16A6NNV3 312 aaPredicted RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 PHF20L1A8MW92 1017 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 ATMINO43313 823 aaPredicted RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 YWHABP31946 246 aaKnown RBP13.51□□□□□ -0.25
USP53-209ENST00000514665 SFNP31947 248 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 PKN1Q16512 942 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 SPDYE2Q495Y8 402 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 EPC2Q52LR7 807 aa13.51□□□□□ -0.25
USP53-209ENST00000514665 RC3H1Q5TC82 1133 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms