RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PPP2CBP62714 309 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 PPP2CAP67775 309 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 USP10Q14694 798 aaKnown RBP5.13□□□□□ -1.59
NUP54-212ENST00000513248 SART3Q15020 963 aaKnown RBP5.13□□□□□ -1.59
NUP54-212ENST00000513248 PDCD1Q15116 288 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 INAVAQ3KP66 663 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 TTC38Q5R3I4 469 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 TRIM68Q6AZZ1 485 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 NECAB2Q7Z6G3 386 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 CIR1Q86X95 450 aaPredicted RBP5.13□□□□□ -1.59
NUP54-212ENST00000513248 PASD1Q8IV76 773 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 SLC41A1Q8IVJ1 513 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 IFNL2Q8IZJ0 200 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 PRPF38AQ8NAV1 312 aaKnown RBP5.13□□□□□ -1.59
NUP54-212ENST00000513248 WDR66Q8TBY9 1149 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 E2F7Q96AV8 911 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 TRIM8Q9BZR9 551 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 TNRQ92752 1358 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 KIF15Q9NS87 1388 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 FGD6Q6ZV73 1430 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 ARHGEF5Q12774 1597 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 SPATA31D1Q6ZQQ2 1576 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 C3P01024 1663 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 CLTCQ00610 1675 aaKnown RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 UBA6A0AVT1 1052 aaPredicted RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 CNOT4O95628 575 aaKnown RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 CNGA1P29973 690 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 RGS3P49796 1198 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 CD83Q01151 205 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 SLC6A3Q01959 620 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 EIF4HQ15056 248 aaKnown RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 DDB1Q16531 1140 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 ZBTB41Q5SVQ8 909 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 UNQ6494/PRO21346Q6UXR6 183 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 SPATS2Q86XZ4 545 aaKnown RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 PHYKPLQ8IUZ5 450 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 THEMISQ8N1K5 641 aaPredicted RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 CALML6Q8TD86 181 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 CARD11Q9BXL7 1154 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 VPS11Q9H270 941 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 JADE2Q9NQC1 790 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 TOPORSQ9NS56 1045 aaPredicted RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 DENND2AQ9ULE3 1009 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 PTPN22Q9Y2R2 807 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 NOP58Q9Y2X3 529 aaKnown RBP5.12□□□□□ -1.59
NUP54-212ENST00000513248 SLC4A7Q9Y6M7 1214 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 ABCC5O15440 1437 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 DAPK1P53355 1430 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 KDM5DQ9BY66 1539 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 PLXNC1O60486 1568 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 PTPN23Q9H3S7 1636 aa5.12□□□□□ -1.59
NUP54-212ENST00000513248 A0A0A6YYJ9 748 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 NPEPPSL1A6NEC2 478 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 GPR42O15529 346 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 PRKD3O94806 890 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 PRPF6O94906 941 aaKnown RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 HMGCRP04035 888 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 CPEP16870 476 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 APEX1P27695 318 aaKnown RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 SELENOPP49908 381 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 KCNQ1P51787 676 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 MANFP55145 182 aaKnown RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 ROM1Q03395 351 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 ZNF568Q3ZCX4 644 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 CT47A1Q5JQC4 288 aaPredicted RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 SLFN13Q68D06 897 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 SLFN12LQ6IEE8 588 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 KIAA1841Q6NSI8 718 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 FRMD7Q6ZUT3 714 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 OTOP2Q7RTS6 562 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 C11orf74Q86VG3 221 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 CXorf67Q86X51 503 aaPredicted RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 ZFPM1Q8IX07 1006 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 CBARPQ8N350 705 aaPredicted RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 PPP1R14CQ8TAE6 165 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 ZCRB1Q8TBF4 217 aaKnown RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 MYL10Q9BUA6 226 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 PUS7LQ9H0K6 701 aaKnown RBP5.11□□□□□ -1.59
NUP54-212ENST00000513248 PCED1AQ9H1Q7 454 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 MEGF9Q9H1U4 602 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 MCM8Q9UJA3 840 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 TESMINQ9Y4I5 508 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 PTPRKQ15262 1439 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 DUOX2Q9NRD8 1548 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 CAMSAP1Q5T5Y3 1602 aa5.11□□□□□ -1.59
NUP54-212ENST00000513248 A0A0G2JNJ9 132 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 MROH2AA6NES4 1674 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 PATE3B3GLJ2 98 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 PFKMP08237 780 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 RRADP55042 308 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 ANTXR2P58335 489 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 FAPQ12884 760 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 NOLC1Q14978 699 aaKnown RBP eCLIP5.1□□□□□ -1.59
NUP54-212ENST00000513248 R3HDM1Q15032 1099 aaKnown RBP5.1□□□□□ -1.59
NUP54-212ENST00000513248 ZMAT1Q5H9K5 638 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 GRAMD4Q6IC98 578 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 STAG1Q8WVM7 1258 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 LMBR1Q8WVP7 490 aa5.1□□□□□ -1.59
NUP54-212ENST00000513248 NKD2Q969F2 451 aaPredicted RBP5.1□□□□□ -1.59
NUP54-212ENST00000513248 PTPN18Q99952 460 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms