RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PATL1Q86TB9 770 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 DIS3LQ8TF46 1054 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 GRAMD1AQ96CP6 724 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 PLVAPQ9BX97 442 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 UBN1Q9NPG3 1134 aa12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 RBMX2Q9Y388 322 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-213ENST00000511496 BCL9LQ86UU0 1499 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 MYO5AQ9Y4I1 1855 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 GSC2O15499 205 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 RXRBP28702 533 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ZNF211Q13398 564 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 SLC18A3Q16572 532 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 KIAA1755Q5JYT7 1200 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 RBM26Q5T8P6 1007 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ARHGEF18Q6ZSZ5 1173 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 GIPC3Q8TF64 312 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 TMEM87BQ96K49 555 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 CEP72Q9P209 647 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 DDX25Q9UHL0 483 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 DCTN4Q9UJW0 460 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ANGPTL2Q9UKU9 493 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 STX8Q9UNK0 236 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 TRAF3IP3Q9Y228 551 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 TRIM17Q9Y577 477 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ARAP3Q8WWN8 1544 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 FBP2O00757 339 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 SERPING1P05155 500 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ATP6V1B1P15313 513 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 RFX5P48382 616 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 DUPD1Q68J44 220 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 KLHDC10Q6PID8 442 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 POTEEQ6S8J3 1075 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 PHLDB2Q86SQ0 1253 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 GIMAP8Q8ND71 665 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 RIN3Q8TB24 985 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 CCDC28BQ9BUN5 200 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 KANSL2Q9H9L4 492 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 USP29Q9HBJ7 922 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ZSWIM5Q9P217 1185 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 HEMK1Q9Y5R4 338 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 PITPNM2Q9BZ72 1349 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 CACNA1FO60840 1977 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 BHMG1C9JSJ3 638 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 XPOTO43592 962 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 SERPINB7O75635 380 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 EYA4O95677 639 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 TFPTP0C1Z6 253 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 GCKRQ14397 625 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 IL17AQ16552 155 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 KRT27Q7Z3Y8 459 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 TXNDC2Q86VQ3 553 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ZSCAN29Q8IWY8 852 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 CFAP61Q8NHU2 1237 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 USP33Q8TEY7 942 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 FAM161BQ96MY7 647 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 EIF2AQ9BY44 585 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 USP40Q9NVE5 1235 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 DDX43Q9NXZ2 648 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 ITGB1BP2Q9UKP3 347 aa12.87□□□□□ -0.35
LIMCH1-213ENST00000511496 A0A1W2PRG0 241 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 VILLO15195 856 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 CCDC22O60826 627 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 SPAG7O75391 227 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 PDGFRBP09619 1106 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 GTF2H1P32780 548 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 RELAQ04206 551 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 STRN3Q13033 797 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 CDC16Q13042 620 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 ZDHHC24Q6UX98 284 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 BTNL9Q6UXG8 535 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 CCDC125Q86Z20 511 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 NELFCDQ8IXH7 590 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 MORC4Q8TE76 937 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 SEC14L1Q92503 715 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 NDE1Q9NXR1 346 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 CNOT7Q9UIV1 285 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 PFASO15067 1338 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 PCSK6P29122 969 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 IL9RQ01113 521 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 SPDYCQ5MJ68 293 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 FAM83BQ5T0W9 1011 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 LMBR1LQ6UX01 489 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 PIK3AP1Q6ZUJ8 805 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 ANO5Q75V66 913 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 JAMLQ86YT9 394 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 MARCH10Q8NA82 808 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 BTBD10Q9BSF8 475 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 MKNK1Q9BUB5 465 aa12.86□□□□□ -0.35
LIMCH1-213ENST00000511496 NEURL1BA8MQ27 555 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ATP5J2-PTCD1G3V325 749 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 PTCD1O75127 700 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 CPA2P48052 419 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 NEK2P51955 445 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ARPC4P59998 168 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ASIC1P78348 528 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 SEPT7Q16181 437 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 HNRNPABQ99729 332 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 ERVK-5Q9HDB9 667 aa12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 RPL26L1Q9UNX3 145 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-213ENST00000511496 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms