RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KIAA0895Q8NCT3 520 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 PPP4R1Q8TF05 950 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 SUCLA2Q9P2R7 463 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 ZSCAN20P17040 1043 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 KLRC1P26715 233 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TNFAIP2Q03169 654 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TMEM119Q4V9L6 283 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF667Q5HYK9 610 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 BEND6Q5SZJ8 279 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 DARS2Q6PI48 645 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 EEPD1Q7L9B9 569 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TTC13Q8NBP0 860 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 NLRP7Q8WX94 980 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TFR2Q9UP52 801 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 NID2Q14112 1375 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 LRRC10BA6NIK2 292 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 CYP26A1O43174 497 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 PRPSAP2O60256 369 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 DGAT1O75907 488 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 CLNS1AP54105 237 aaKnown RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TKFCQ3LXA3 575 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TRIM42Q8IWZ5 723 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TAB3Q8N5C8 712 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 HVCN1Q96D96 273 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 SNF8Q96H20 258 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 RILPQ96NA2 401 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 TTC25Q96NG3 672 aa11.52□□□□□ -0.57
LIMCH1-205ENST00000503057 GMNCA6NCL1 334 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 PHF2O75151 1096 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 PLA2G4AP47712 749 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 GPC3P51654 580 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 OSTNP61366 133 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 NR1H3Q13133 447 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 MTMR2Q13614 643 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 GIT2Q14161 759 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 RHOT1Q8IXI2 618 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 C11orf70Q9BRQ4 267 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 RUSC1Q9BVN2 902 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 AGO2Q9UKV8 859 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 MARK3P27448 753 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF699Q32M78 642 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 BSPRYQ5W0U4 402 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 SYDE1Q6ZW31 735 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 MRPL4Q9BYD3 311 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 TBK1Q9UHD2 729 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 FOXP2O15409 715 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 PON1P27169 355 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 SHMT1P34896 483 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 GARSP41250 739 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 SNRNP35Q16560 246 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 XRRA1Q6P2D8 792 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 TADA2BQ86TJ2 420 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 NLRP14Q86W24 1093 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 HEXIM2Q96MH2 286 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 NLRP4Q96MN2 994 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 CALN1Q9BXU9 219 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 RBAKQ9NYW8 714 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 CLTAP09496 248 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 BASP1P80723 227 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 DPP9Q86TI2 863 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 PASD1Q8IV76 773 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 MAD1L1Q9Y6D9 718 aa11.51□□□□□ -0.57
LIMCH1-205ENST00000503057 CYTH3O43739 400 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 BMP6P22004 513 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 TAP1Q03518 808 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 NFIAQ12857 509 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 OR6B2Q6IFH4 312 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 NSMCE1Q8WV22 266 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 PSPC1Q8WXF1 523 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 UNC45AQ9H3U1 944 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 GINM1Q9NU53 330 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 PNMA5Q96PV4 448 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 ISCUQ9H1K1 167 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 SNX25Q9H3E2 840 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 HAUS2Q9NVX0 235 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 DDX56Q9NY93 547 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 BCL9LQ86UU0 1499 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 RAD51CO43502 376 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 ZKSCAN8Q15776 578 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 KIAA1755Q5JYT7 1200 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 SESTD1Q86VW0 696 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 RDM1Q8NG50 284 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 DUSP9Q99956 384 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 NCAPGQ9BPX3 1015 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 PARVAQ9NVD7 372 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 MAFGO15525 162 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 CPP00450 1065 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 PROCA1Q8NCQ7 364 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 SCFD1Q8WVM8 642 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 HEMGNQ9BXL5 484 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 SAYSD1Q9NPB0 183 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 AGPAT3Q9NRZ7 376 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 KCNH7Q9NS40 1196 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 ANKEF1Q9NU02 776 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 MAP3K20Q9NYL2 800 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 SEPT10Q9P0V9 454 aa11.5□□□□□ -0.57
LIMCH1-205ENST00000503057 XKR3Q5GH77 459 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 PDIK1LQ8N165 341 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 NME8Q8N427 588 aa11.49□□□□□ -0.57
LIMCH1-205ENST00000503057 PYROXD1Q8WU10 500 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms