RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 FAM117BQ6P1L5 589 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.74□□□□□ -1.33
SSBP1-213ENST00000496622 KSR1Q8IVT5 923 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 CCDC155Q8N6L0 562 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 C3orf20Q8ND61 904 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 GIMAP8Q8ND71 665 aaPredicted RBP6.74□□□□□ -1.33
SSBP1-213ENST00000496622 ATRIPQ8WXE1 791 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 TRIM47Q96LD4 638 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 PAGR1Q9BTK6 254 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 TRIM6Q9C030 488 aaPredicted RBP6.74□□□□□ -1.33
SSBP1-213ENST00000496622 SEMA6BQ9H3T3 888 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 ZNF408Q9H9D4 720 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 SLC38A10Q9HBR0 1119 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 EXOC1Q9NV70 894 aa6.74□□□□□ -1.33
SSBP1-213ENST00000496622 GREB1LQ9C091 1923 aaPredicted RBP6.74□□□□□ -1.33
SSBP1-213ENST00000496622 FER1L6Q2WGJ9 1857 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 N4BP3O15049 544 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 ICAM1P05362 532 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 PLA2G4BP0C869 781 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 SFPQP23246 707 aaKnown RBP eCLIP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 MRPS9P82933 396 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 AP3B2Q13367 1082 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 BAATQ14032 418 aaPredicted RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 KCTD2Q14681 263 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 NR1I3Q14994 352 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 TMEM132BQ14DG7 1078 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 CEP55Q53EZ4 464 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 CCDC92Q53HC0 331 aaPredicted RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 OTOP1Q7RTM1 612 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 MYOCDQ8IZQ8 938 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 CSGALNACT2Q8N6G5 542 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 ZNF775Q96BV0 537 aaPredicted RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 DNAJC19Q96DA6 116 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 RAB34Q9BZG1 259 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 SH2D4AQ9H788 454 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 ELP3Q9H9T3 547 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 KCNH7Q9NS40 1196 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 PGPEP1Q9NXJ5 209 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 ADD3Q9UEY8 706 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 IP6K2Q9UHH9 426 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 VAV3Q9UKW4 847 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 PPP1R9AQ9ULJ8 1098 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 SSC5DA1L4H1 1573 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 CYP3A7-CYP3A51PA0A087WV96 503 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 KCNJ18B7U540 433 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 TRAF5O00463 557 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 WDR46O15213 610 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 CYP3A7P24462 503 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 RDXP35241 583 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 DHX9Q08211 1270 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 RBL2Q08999 1139 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 NCOA4Q13772 614 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 KCNJ12Q14500 433 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 HERC4Q5GLZ8 1057 aaPredicted RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 CDKAL1Q5VV42 579 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 E4F1Q66K89 784 aaPredicted RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 SNRNP48Q6IEG0 339 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 GPBP1Q86WP2 473 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 VSTM4Q8IW00 320 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 GIMAP7Q8NHV1 300 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 KIF18AQ8NI77 898 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 PARD3BQ8TEW8 1205 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 VMP1Q96GC9 406 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 DYDC2Q96IM9 177 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 BAG1Q99933 345 aaPredicted RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 EIF2AK1Q9BQI3 630 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 ZNF577Q9BSK1 485 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 DESI2Q9BSY9 194 aa6.73□□□□□ -1.33
SSBP1-213ENST00000496622 MRPL11Q9Y3B7 192 aaKnown RBP6.73□□□□□ -1.33
SSBP1-213ENST00000496622 FAM170AA1A519 330 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 LRRC10BA6NIK2 292 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 B4DLN1 442 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 SLITRK3O94933 977 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 FOSL1P15407 271 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 PECAM1P16284 738 aaPredicted RBP6.72□□□□□ -1.33
SSBP1-213ENST00000496622 GCFC2P16383 781 aaKnown RBP6.72□□□□□ -1.33
SSBP1-213ENST00000496622 CDC25BP30305 580 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 ERVK-9P63128 1117 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 APBA1Q02410 837 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 MPP3Q13368 585 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 TMEM119Q4V9L6 283 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 TCP11X2Q5H9J9 407 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 DCAF15Q66K64 600 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 TTI2Q6NXR4 508 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 MTHFD1LQ6UB35 978 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 FAM160B2Q86V87 743 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 PLPP7Q8NBV4 271 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 NEK11Q8NG66 645 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.72□□□□□ -1.33
SSBP1-213ENST00000496622 SYTL5Q8TDW5 730 aaPredicted RBP6.72□□□□□ -1.33
SSBP1-213ENST00000496622 LPAR1Q92633 364 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 RMDN3Q96TC7 470 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 C7orf25Q9BPX7 421 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 RUSC1Q9BVN2 902 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 RWDD2AQ9UIY3 292 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 DOLKQ9UPQ8 538 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 SAMM50Q9Y512 469 aa6.72□□□□□ -1.33
SSBP1-213ENST00000496622 COL2A1P02458 1487 aaPredicted RBP6.72□□□□□ -1.33
SSBP1-213ENST00000496622 MYH7BA7E2Y1 1941 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms