RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 LDHBP07195 334 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 COPB2P35606 906 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 COILP38432 576 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 YARSP54577 528 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ROR2Q01974 943 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 STRN3Q13033 797 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CALCOCO2Q13137 446 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ZNF211Q13398 564 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 KIF22Q14807 665 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SLC4A8Q2Y0W8 1093 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SLC10A5Q5PT55 438 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 WASHC2DQ5SRD0 308 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 TTC27Q6P3X3 843 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 POTEBQ6S5H4 581 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 MOXD1Q6UVY6 613 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SLFN12Q8IYM2 578 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 KCTD17Q8N5Z5 321 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 SYT2Q8N9I0 419 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 PIGOQ8TEQ8 1089 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 UTP4Q969X6 686 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ARHGEF26Q96DR7 871 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 RMDN2Q96LZ7 410 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 MBOAT7Q96N66 472 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 TGS1Q96RS0 853 aaKnown RBP10.41□□□□□ -0.74
SYNE1-230ENST00000495090 GLT8D2Q9H1C3 349 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 WNT8AQ9H1J5 351 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ETNK1Q9HBU6 452 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 VAT1LQ9HCJ6 419 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 ALG6Q9Y672 507 aa10.41□□□□□ -0.74
SYNE1-230ENST00000495090 CYP3A7-CYP3A51PA0A087WV96 503 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 GPR75-ASB3A0A0A6YYF3 556 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 LRRD1A4D1F6 860 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 EIF3DO15371 548 aaKnown RBP eCLIP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 MAGEB2O15479 319 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 PEX11AO75192 247 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 LMNAP02545 664 aaKnown RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 LDHCP07864 332 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 TPBGLP0DKB5 382 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 PLCG2P16885 1265 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CYP3A7P24462 503 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CNGA1P29973 690 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CTCFP49711 727 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 PEX5P50542 639 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 MGAT5Q09328 741 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 TRAF1Q13077 416 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 DRAP1Q14919 205 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 LRRC14Q15048 493 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 UBAP2Q5T6F2 1119 aaKnown RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 TCERG1LQ5VWI1 586 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CWF19L1Q69YN2 538 aaKnown RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 ANO7Q6IWH7 933 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CGB2Q6NT52 195 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 RHBDF2Q6PJF5 856 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 SYDE1Q6ZW31 735 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 BRINP3Q76B58 766 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 ADAT2Q7Z6V5 191 aaKnown RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 SFR1Q86XK3 245 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 ECHDC2Q86YB7 292 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 ANKLE1Q8NAG6 615 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 RNF217Q8TC41 542 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 PARD3BQ8TEW8 1205 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 COA7Q96BR5 231 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CEP95Q96GE4 821 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 YIPF3Q9GZM5 350 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 GPR88Q9GZN0 384 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 THAP2Q9H0W7 228 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 CDC42EP4Q9H3Q1 356 aaKnown RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 LRRC19Q9H756 370 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 GGT7Q9UJ14 662 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 COG5Q9UP83 839 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 ATF5Q9Y2D1 282 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-230ENST00000495090 STARD13Q9Y3M8 1113 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 ASB3Q9Y575 518 aa10.4□□□□□ -0.74
SYNE1-230ENST00000495090 MROH7Q68CQ1 1323 aa10.4□□□□□ -0.75
SYNE1-230ENST00000495090 MYO3BQ8WXR4 1341 aa10.4□□□□□ -0.75
SYNE1-230ENST00000495090 ARFGEF1Q9Y6D6 1849 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ENO4A6NNW6 628 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 USP17L5A8MUK1 530 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TRAFD1O14545 582 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ECEL1O95672 775 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ITIH2P19823 946 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ABCB4P21439 1286 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 TNFAIP3P21580 790 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 STX2P32856 288 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 PSMC2P35998 433 aaKnown RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 GCLCP48506 637 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 RASSF2P50749 326 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 PAPOLAP51003 745 aaKnown RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 RAB27AP51159 221 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 POLGP54098 1239 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 CAV1Q03135 178 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 SF3A3Q12874 501 aaKnown RBP eCLIP10.39□□□□□ -0.75
SYNE1-230ENST00000495090 SETDB1Q15047 1291 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 LONRF1Q17RB8 773 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 ERFEQ4G0M1 354 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 GJB7Q6PEY0 223 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 RGS9BPQ6ZS82 235 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 C3orf67Q6ZVT6 689 aa10.39□□□□□ -0.75
SYNE1-230ENST00000495090 INTS8Q75QN2 995 aaKnown RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms