RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 SAAL1Q96ER3 474 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 CELF4Q9BZC1 486 aaKnown RBP12.12□□□□□ -0.47
CHMP3-209ENST00000494623 TMEM117Q9H0C3 514 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 PXMP2Q9NR77 195 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 NR2E1Q9Y466 385 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 RIPK3Q9Y572 518 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 PSME4Q14997 1843 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 TMEM110-MUSTN1A8MSY1 372 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 ANKRD63C9JTQ0 380 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 DDX3YO15523 660 aaKnown RBP12.12□□□□□ -0.47
CHMP3-209ENST00000494623 TTI1O43156 1089 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 DAPK3O43293 454 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 SGPL1O95470 568 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 GNGT1P63211 74 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 BAATQ14032 418 aaPredicted RBP12.12□□□□□ -0.47
CHMP3-209ENST00000494623 EPC2Q52LR7 807 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 SAMD7Q7Z3H4 446 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 MAATS1Q7Z4T9 603 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 CBWD2Q8IUF1 395 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 CCDC26Q8TAB7 109 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 ATG4CQ96DT6 458 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 POP1Q99575 1024 aaKnown RBP12.12□□□□□ -0.47
CHMP3-209ENST00000494623 ACP6Q9NPH0 428 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 CTTNBP2NLQ9P2B4 639 aa12.12□□□□□ -0.47
CHMP3-209ENST00000494623 WDR64B1ANS9 1081 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 CTNND1O60716 968 aaKnown RBP12.11□□□□□ -0.47
CHMP3-209ENST00000494623 ADRB2P07550 413 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 RFX1P22670 979 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 ECHS1P30084 290 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 COPB2P35606 906 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 MXI1P50539 228 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 ATP1A2P50993 1020 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 SOX10P56693 466 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 C12orf56Q8IXR9 622 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 PPM1KQ8N3J5 372 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 MREGQ8N565 214 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 ELMO3Q96BJ8 720 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 NEUROG2Q9H2A3 272 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 MAP3K20Q9NYL2 800 aaKnown RBP12.11□□□□□ -0.47
CHMP3-209ENST00000494623 TMOD4Q9NZQ9 345 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 PIM2Q9P1W9 311 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 PLAAQ9Y263 795 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 SORBS3O60504 671 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 ADSSP30520 456 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 JAK3P52333 1124 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 SP4Q02446 784 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 GHRHRQ02643 423 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 CUL1Q13616 776 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 TNFAIP1Q13829 316 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 NBPF12Q5TAG4 269 aaPredicted RBP12.11□□□□□ -0.47
CHMP3-209ENST00000494623 DCAF12L1Q5VU92 463 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 IWS1Q96ST2 819 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 TRIM31Q9BZY9 425 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 DPH5Q9H2P9 285 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 CENPHQ9H3R5 247 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 TBX20Q9UMR3 447 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 ALG6Q9Y672 507 aa12.11□□□□□ -0.47
CHMP3-209ENST00000494623 VWA5AO00534 786 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 P4HA2O15460 535 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 CYP26A1O43174 497 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SHOX2O60902 331 aaPredicted RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 PPFIA4O75335 1185 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 HSPA9P38646 679 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 NPTX2P47972 431 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SMTNP53814 917 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 NCKAP1LP55160 1127 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SNRNP35Q16560 246 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 CEP85LQ5SZL2 805 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 PRAMEF18Q5VWM3 479 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 ANO5Q75V66 913 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 DEFB132Q7Z7B7 95 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 NLRX1Q86UT6 975 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 RNPC3Q96LT9 517 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 PCDHB18PQ96TA0 734 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 RNF146Q9NTX7 359 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 FZD1Q9UP38 647 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 RRP15Q9Y3B9 282 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 DAAM1Q9Y4D1 1078 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 TNS1Q9HBL0 1735 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 DENND3A2RUS2 1198 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 CNGA1P29973 690 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SFNP31947 248 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 FLT3P36888 993 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 HSD17B3P37058 310 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 GPC5P78333 572 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 KRT76Q01546 638 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 AADACL2Q6P093 401 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 TMEM161BQ8NDZ6 487 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 OR2W6PQ8NHA6 318 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SEMA4DQ92854 862 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 ZKSCAN4Q969J2 545 aaPredicted RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 CEP170P1Q96L14 293 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 MOV10L1Q9BXT6 1211 aaKnown RBP12.1□□□□□ -0.47
CHMP3-209ENST00000494623 TAOK3Q9H2K8 898 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 ST6GALNAC4Q9H4F1 302 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 SLITRK6Q9H5Y7 841 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 KMT5AQ9NQR1 393 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 ANKEF1Q9NU02 776 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 GABBR1Q9UBS5 961 aa12.1□□□□□ -0.47
CHMP3-209ENST00000494623 EXOC7Q9UPT5 735 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms