RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PLCB1Q9NQ66 1216 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KCND1Q9NSA2 647 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 AKT3Q9Y243 479 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TOGARAM1Q9Y4F4 1720 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PALMO75781 387 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 AP1G2O75843 785 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CPP00450 1065 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KRT14P02533 472 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 P4HBP07237 508 aaKnown RBP11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 POTEJP0CG39 1038 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CDKAL1Q5VV42 579 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 C9orf131Q5VYM1 1079 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CAPN12Q6ZSI9 719 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SH3RF1Q7Z6J0 888 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ATP6V0A1Q93050 837 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MTMR9Q96QG7 549 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CBWD1Q9BRT8 395 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ACP6Q9NPH0 428 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EMSYQ7Z589 1322 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DCAF8L1A6NGE4 600 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 WDR64B1ANS9 1081 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 K7ERI5 159 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ATMINO43313 823 aaPredicted RBP11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 AKAP3O75969 853 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GIT2Q14161 759 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 NBPF20Q3BBV1 942 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CLMNQ96JQ2 1002 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PACSIN1Q9BY11 444 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PTPN22Q9Y2R2 807 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PKD1L3Q7Z443 1732 aa11.55□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TARSL2A2RTX5 802 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RGS16O15492 202 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EYA4O95677 639 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GNA14O95837 355 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 IREB2P48200 963 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ZBTB16Q05516 673 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MXRA8Q9BRK3 442 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DNAJC17Q9NVM6 304 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 WDR46O15213 610 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 BCRP11274 1271 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SLC8A3P57103 927 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PREPLQ4J6C6 727 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GJC2Q5T442 439 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SIAH1Q8IUQ4 282 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GMCL1Q96IK5 515 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TEX13BQ9BXU2 312 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EVI5O60447 810 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ALDH3A1P30838 453 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SREBF1P36956 1147 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 BACE1P56817 501 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DRAP1Q14919 205 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TKFCQ3LXA3 575 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 WDR93Q6P2C0 686 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RHPN2Q8IUC4 686 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SYTL5Q8TDW5 730 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ACAD9Q9H845 621 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 FAM114A2Q9NRY5 505 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 INTS9Q9NV88 658 aaKnown RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ETAA1Q9NY74 926 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PLAAQ9Y263 795 aa11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SIPA1L3O60292 1781 aaPredicted RBP11.54□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CREB3O43889 395 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SLITRK3O94933 977 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MDH1P40925 334 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 STXBP2Q15833 593 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KAZNQ674X7 775 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SLC30A5Q8TAD4 765 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 KAT2BQ92831 832 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 DDX27Q96GQ7 796 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 HOXC10Q9NYD6 342 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TSKSQ9UJT2 592 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 EXOC7Q9UPT5 735 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PIK3R2O00459 728 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CSPG5O95196 566 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GGPS1O95749 300 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ITGB5P18084 799 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 SNX1Q13596 522 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GSTA5Q7RTV2 222 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 USP37Q86T82 979 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 IRF2BP1Q8IU81 584 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RETREG2Q8NC44 543 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ACCSQ96QU6 501 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ELAC2Q9BQ52 826 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 VCX3BQ9H321 246 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 METTL14Q9HCE5 456 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 VCX3AQ9NNX9 186 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 TOPORSQ9NS56 1045 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CAPN11Q9UMQ6 739 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 UTP11Q9Y3A2 253 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ZNF541Q9H0D2 1346 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 CYP2C8P10632 490 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 GSCP56915 257 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 RAB3IPQ96QF0 476 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MPHOSPH6Q99547 160 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 LRRC1Q9BTT6 524 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 JPH1Q9HDC5 661 aaPredicted RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 MTRF1LQ9UGC7 380 aaKnown RBP11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 PCDHA10Q9Y5I2 948 aa11.53□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 ICAM1P05362 532 aa11.52□□□□□ -0.56
MSH5-SAPCD1-207ENST00000493662 COPB2P35606 906 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms