RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 MTFMTQ96DP5 389 aaKnown RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 DBNDD2Q9BQY9 259 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 NOL10Q9BSC4 688 aaKnown RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 CARS2Q9HA77 564 aaKnown RBP5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PNPLA8Q9NP80 782 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 SLAMF8Q9P0V8 285 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 PADI4Q9UM07 663 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 CEP83Q9Y592 693 aa5.6□□□□□ -1.51
VPS13A-212ENST00000493341 USP19O94966 1318 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 SLC16A6O15403 523 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 PHGDHO43175 533 aaKnown RBP5.59□□□□□ -1.51
VPS13A-212ENST00000493341 OPHN1O60890 802 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 RPL17P18621 184 aaKnown RBP5.59□□□□□ -1.51
VPS13A-212ENST00000493341 WASP42768 502 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 CYP4F8P98187 520 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 IKZF1Q13422 519 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 KRBA2Q6ZNG9 492 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 MAATS1Q7Z4T9 603 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 ZSCAN18Q8TBC5 510 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-212ENST00000493341 GCC1Q96CN9 775 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 SLC39A2Q9NP94 309 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 ACSL6Q9UKU0 697 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 PCDHA3Q9Y5H8 950 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 RPS6KL1Q9Y6S9 549 aa5.59□□□□□ -1.51
VPS13A-212ENST00000493341 M0R3H8 397 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 ADAMTS3O15072 1205 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 FGF18O76093 207 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 LDHCP07864 332 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 BRAFP15056 766 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 XPAP23025 273 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PTGS1P23219 599 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 CD96P40200 585 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PPP3CAQ08209 521 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PPFIA1Q13136 1202 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 NOGQ13253 232 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PMS2P11Q13670 270 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 BLMHQ13867 455 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 TREML4Q6UXN2 200 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 ANKS4BQ8N8V4 417 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 NETO2Q8NC67 525 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 IL31RAQ8NI17 732 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 NSUN6Q8TEA1 469 aaKnown RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 TBC1D20Q96BZ9 403 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PDGFDQ9GZP0 370 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 RBM12Q9NTZ6 932 aaKnown RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 LMBRD1Q9NUN5 540 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 FTSJ1Q9UET6 329 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 CPA4Q9UI42 421 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 SCOCQ9UIL1 159 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 EPB41L2O43491 1005 aaKnown RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 FRS3O43559 492 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 IL18RAPO95256 599 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PYGLP06737 847 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PARP1P09874 1014 aaKnown RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 TSHRP16473 764 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 TNFAIP3P21580 790 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 SLC7A1P30825 629 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 HK2P52789 917 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 HK3P52790 923 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 MGAT2Q10469 447 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 DDX10Q13206 875 aaKnown RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 GRM1Q13255 1194 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PLS1Q14651 629 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 KLHDC7AQ5VTJ3 777 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 LRSAM1Q6UWE0 723 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 TMC6Q7Z403 805 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 C3orf20Q8ND61 904 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 ANKS1AQ92625 1134 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 LTV1Q96GA3 475 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 TBATAQ96M53 351 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 PPP1R16BQ96T49 567 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 VRK1Q99986 396 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-212ENST00000493341 NUDT5Q9UKK9 219 aa5.58□□□□□ -1.52
VPS13A-212ENST00000493341 DYTNA2CJ06 578 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 F8W8V4 182 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 FOXN3O00409 490 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 APOL1O14791 398 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 MAFGO15525 162 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 SMARCA1P28370 1054 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CASP2P42575 452 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CHRNA4P43681 627 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 FMO1Q01740 532 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CNGA2Q16280 664 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 ARL13BQ3SXY8 428 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 L1TD1Q5T7N2 865 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CD276Q5ZPR3 534 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 HEATR3Q7Z4Q2 680 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 FAM129CQ86XR2 697 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 ANKRD18AQ8IVF6 992 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 TTLL11Q8NHH1 800 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 TMEM41AQ96HV5 264 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 CLPTM1LQ96KA5 538 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 HIST1H2AHQ96KK5 128 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 NEUROD6Q96NK8 337 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 ALPK1Q96QP1 1244 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 HIST1H2AJQ99878 128 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 AMNQ9BXJ7 453 aa5.57□□□□□ -1.52
VPS13A-212ENST00000493341 UNKQ9C0B0 810 aaKnown RBP5.57□□□□□ -1.52
VPS13A-212ENST00000493341 INCENPQ9NQS7 918 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms