RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF862O60290 1169 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 CLSTN1O94985 981 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 MOCS3O95396 460 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 ZBTB48P10074 688 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 ERCC3P19447 782 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 GARTP22102 1010 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 NPTX2P47972 431 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 APBA1Q02410 837 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 GABPB1Q06547 395 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 CETN1Q12798 172 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 VGLL4Q14135 290 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 STXBP2Q15833 593 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 GLIPR1L2Q4G1C9 344 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 GLE1Q53GS7 698 aaKnown RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 BRDTQ58F21 947 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 XKR9Q5GH70 373 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 XKR3Q5GH77 459 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 DCAF17Q5H9S7 520 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 C1orf220Q5T0J3 134 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 MEI1Q5TIA1 1274 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 TCERG1LQ5VWI1 586 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 MIS18BP1Q6P0N0 1132 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 SLFN11Q7Z7L1 901 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 NOA1Q8NC60 698 aaKnown RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 OSBPL9Q96SU4 736 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 PNKPQ96T60 521 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 NIFKQ9BYG3 293 aaKnown RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 GPR88Q9GZN0 384 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 INTS2Q9H0H0 1204 aaKnown RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 POLD4Q9HCU8 107 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 JPH1Q9HDC5 661 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 HSPBP1Q9NZL4 362 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 KCNH4Q9UQ05 1017 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 MAFBQ9Y5Q3 323 aaPredicted RBP11.68□□□□□ -0.54
USP4-214ENST00000491791 STYXL1Q9Y6J8 313 aa11.68□□□□□ -0.54
USP4-214ENST00000491791 KIAA1217Q5T5P2 1943 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 A0A0G2JLL6 359 aaPredicted RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 PDE2AO00408 941 aaPredicted RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 SUPT20HL2P0C7V6 817 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 TGFB3P10600 412 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 KLRC1P26715 233 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 IREB2P48200 963 aaKnown RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 CYP2J2P51589 502 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 VAMP7P51809 220 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 HADHBP55084 474 aaKnown RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 ACTR2P61160 394 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 CLDN10P78369 228 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 MYL7Q01449 175 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 LONRF2Q1L5Z9 754 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 KIAA0753Q2KHM9 967 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 CBWD6Q4V339 395 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 CBWD3Q5JTY5 395 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 CBWD5Q5RIA9 395 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 ALKBH5Q6P6C2 394 aaKnown RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 PRRT2Q7Z6L0 340 aaPredicted RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 KSR1Q8IVT5 923 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 LRRC57Q8N9N7 239 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 IKZF4Q9H2S9 585 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 VIPAS39Q9H9C1 493 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 PKD2L1Q9P0L9 805 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 ARHGAP28Q9P2N2 729 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 GABBR1Q9UBS5 961 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 DNAJC12Q9UKB3 198 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 AJAP1Q9UKB5 411 aaPredicted RBP11.67□□□□□ -0.54
USP4-214ENST00000491791 OTOFQ9HC10 1997 aa11.67□□□□□ -0.54
USP4-214ENST00000491791 NCANO14594 1321 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 SYNGAP1Q96PV0 1343 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 DDX3XO00571 662 aaKnown RBP eCLIP11.66□□□□□ -0.542e-8■■■■□ 21
USP4-214ENST00000491791 EVI5O60447 810 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 SLC25A27O95847 323 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 PIGRP01833 764 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 H2AFZP0C0S5 128 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 TNFRSF8P28908 595 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 CNGA1P29973 690 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 ADSSP30520 456 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 PLA2G4AP47712 749 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 PEX3P56589 373 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 DMP1Q13316 513 aaPredicted RBP11.66□□□□□ -0.54
USP4-214ENST00000491791 DRAP1Q14919 205 aaPredicted RBP11.66□□□□□ -0.54
USP4-214ENST00000491791 H2AFVQ71UI9 128 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 USP37Q86T82 979 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 ERO1BQ86YB8 467 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 IFNL1Q8IU54 200 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 LMBR1Q8WVP7 490 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 FAM81BQ96LP2 452 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 CCDC43Q96MW1 224 aaKnown RBP11.66□□□□□ -0.54
USP4-214ENST00000491791 CEP89Q96ST8 783 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 CBWD1Q9BRT8 395 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 EPC1Q9H2F5 836 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 KIAA1586Q9HCI6 787 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 XPNPEP1Q9NQW7 623 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 CYP26B1Q9NR63 512 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 CSADQ9Y600 493 aa11.66□□□□□ -0.54
USP4-214ENST00000491791 SIP14410 1827 aa11.65□□□□□ -0.54
USP4-214ENST00000491791 SPDYE5A6NIY4 337 aa11.65□□□□□ -0.54
USP4-214ENST00000491791 SLC16A4O15374 487 aa11.65□□□□□ -0.54
USP4-214ENST00000491791 SRGAP2O75044 1071 aa11.65□□□□□ -0.54
USP4-214ENST00000491791 ZC3H11AO75152 810 aaKnown RBP eCLIP11.65□□□□□ -0.54
USP4-214ENST00000491791 TMEM253P0C7T8 217 aa11.65□□□□□ -0.54
USP4-214ENST00000491791 ALDH5A1P51649 535 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms