RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 IGSF21Q96ID5 467 aa17.53■□□□□ 0.4
SMPD4-220ENST00000491319 EIF2AK1Q9BQI3 630 aaKnown RBP17.53■□□□□ 0.4
SMPD4-220ENST00000491319 WDFY4Q6ZS81 3184 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 ZDBF2Q9HCK1 2354 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 NEMFO60524 1076 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 SLITRK3O94933 977 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 HOXB8P17481 243 aaPredicted RBP17.52■□□□□ 0.4
SMPD4-220ENST00000491319 HOXD11P31277 338 aaPredicted RBP17.52■□□□□ 0.4
SMPD4-220ENST00000491319 SLC11A1P49279 550 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 AFF1P51825 1210 aaKnown RBP17.52■□□□□ 0.4
SMPD4-220ENST00000491319 DDX53Q86TM3 631 aaKnown RBP17.52■□□□□ 0.4
SMPD4-220ENST00000491319 ZNF280BQ86YH2 543 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 PGBD4Q96DM1 585 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 VN1R3Q9BXE9 311 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 TTC12Q9H892 705 aaPredicted RBP17.52■□□□□ 0.4
SMPD4-220ENST00000491319 RSAD1Q9HA92 442 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 PCDHA12Q9UN75 941 aa17.52■□□□□ 0.4
SMPD4-220ENST00000491319 ERLIN2O94905 339 aa17.51■□□□□ 0.39
SMPD4-220ENST00000491319 CXCL14O95715 111 aa17.51■□□□□ 0.39
SMPD4-220ENST00000491319 CTSAP10619 480 aa17.51■□□□□ 0.39
SMPD4-220ENST00000491319 MRPL10Q7Z7H8 261 aaKnown RBP17.51■□□□□ 0.39
SMPD4-220ENST00000491319 URGCPQ8TCY9 931 aa17.51■□□□□ 0.39
SMPD4-220ENST00000491319 HSD17B14Q9BPX1 270 aa17.51■□□□□ 0.39
SMPD4-220ENST00000491319 MTCL1Q9Y4B5 1905 aaKnown RBP17.51■□□□□ 0.39
SMPD4-220ENST00000491319 CNTNAP2Q9UHC6 1331 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 TRIP11Q15643 1979 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 POTEMA6NI47 508 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 ASAP2O43150 1006 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 TSPAN1O60635 241 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 DDHD2O94830 711 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 LYPLA2O95372 231 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 SEC24BO95487 1268 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 TXKP42681 527 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 PTENP60484 403 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 ZXDAP98168 799 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 TRIM29Q14134 588 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 BMS1Q14692 1282 aaKnown RBP17.5■□□□□ 0.39
SMPD4-220ENST00000491319 TPRNQ4KMQ1 711 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 TRIM67Q6ZTA4 783 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 SMG8Q8ND04 991 aaKnown RBP17.5■□□□□ 0.39
SMPD4-220ENST00000491319 ASAP3Q8TDY4 903 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 CPB2Q96IY4 423 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 EIF2AQ9BY44 585 aaKnown RBP17.5■□□□□ 0.39
SMPD4-220ENST00000491319 POMKQ9H5K3 350 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 IRAK3Q9Y616 596 aa17.5■□□□□ 0.39
SMPD4-220ENST00000491319 A0A087WWV3 80 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 CARNS1A5YM72 827 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 TMEM221A6NGB7 291 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 M0R296 226 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 POMCP01189 267 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 WEE2P0C1S8 567 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 EPCAMP16422 314 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 NCLP19338 710 aaKnown RBP17.49■□□□□ 0.39
SMPD4-220ENST00000491319 RARRES1P49788 294 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 GUCY1B3Q02153 619 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 CAPSQ13938 189 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 MXD4Q14582 209 aaPredicted RBP17.49■□□□□ 0.39
SMPD4-220ENST00000491319 PIGOQ8TEQ8 1089 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 FBXL18Q96ME1 805 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 CCDC43Q96MW1 224 aaKnown RBP17.49■□□□□ 0.39
SMPD4-220ENST00000491319 MTMR9Q96QG7 549 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 TMEM60Q9H2L4 133 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 ADAM7Q9H2U9 754 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 TSHZ2Q9NRE2 1034 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 ANKEF1Q9NU02 776 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 IPPQ9Y573 584 aa17.49■□□□□ 0.39
SMPD4-220ENST00000491319 INO80B-WBP1J3KQ70 363 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 DGAT1O75907 488 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 MBTD1Q05BQ5 628 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 ITIH3Q06033 890 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 TFDP1Q14186 410 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 PTPN14Q15678 1187 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 RARS2Q5T160 578 aaKnown RBP17.48■□□□□ 0.39
SMPD4-220ENST00000491319 ERICH6BQ5W0A0 696 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 CES5AQ6NT32 575 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 KANK3Q6NY19 840 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 NOTUMQ6P988 496 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 IFNLR1Q8IU57 520 aaPredicted RBP17.48■□□□□ 0.39
SMPD4-220ENST00000491319 C12orf76Q8N812 135 aaPredicted RBP17.48■□□□□ 0.39
SMPD4-220ENST00000491319 TMEM87AQ8NBN3 555 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 FEZF2Q8TBJ5 459 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 MFSD14AQ96MC6 490 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 FAM193BQ96PV7 902 aaPredicted RBP17.48■□□□□ 0.39
SMPD4-220ENST00000491319 HES2Q9Y543 173 aa17.48■□□□□ 0.39
SMPD4-220ENST00000491319 PIEZO1Q92508 2521 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 USO1O60763 962 aaKnown RBP17.47■□□□□ 0.39
SMPD4-220ENST00000491319 SSBP05455 408 aaKnown RBP eCLIP17.47■□□□□ 0.39
SMPD4-220ENST00000491319 ITGA4P13612 1032 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 ATP2B1P20020 1258 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 GLRA2P23416 452 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 MCM7P33993 719 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 ARL2P36404 184 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 MLH1P40692 756 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 GIT2Q14161 759 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 AMHR2Q16671 573 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 PTPN21Q16825 1174 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 BMP8AQ7Z5Y6 402 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 SLC22A17Q8WUG5 538 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 PBXIP1Q96AQ6 731 aa17.47■□□□□ 0.39
SMPD4-220ENST00000491319 TMEM175Q9BSA9 504 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms