RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 YTHDF3Q7Z739 585 aaKnown RBP13.72□□□□□ -0.21
SHOX2-205ENST00000490689 VGLL2Q8N8G2 317 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 TTC16Q8NEE8 873 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 TBC1D22AQ8WUA7 517 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 SCFD1Q8WVM8 642 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 FAM161BQ96MY7 647 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 PNMA5Q96PV4 448 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 MXD3Q9BW11 206 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 IL17RBQ9NRM6 502 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 C15orf41Q9Y2V0 281 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 PI4K2BG5E9Z4 385 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 PPP1R12AO14974 1030 aaPredicted RBP13.72□□□□□ -0.21
SHOX2-205ENST00000490689 C2CD6Q53TS8 623 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 PYROXD1Q8WU10 500 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 INPP4AQ96PE3 977 aaPredicted RBP13.72□□□□□ -0.21
SHOX2-205ENST00000490689 UBN1Q9NPG3 1134 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 MAD1L1Q9Y6D9 718 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 PDXKO00764 312 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 AKAP3O75969 853 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 STAMBPO95630 424 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 KRT1P04264 644 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 FMO5P49326 533 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 SYCP2LQ5T4T6 812 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 ANKMY2Q8IV38 441 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 ZBED8Q8IZ13 594 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 ABTB1Q969K4 478 aaPredicted RBP13.72□□□□□ -0.21
SHOX2-205ENST00000490689 C11orf70Q9BRQ4 267 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 HAUS5O94927 633 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 CYP11B2P19099 503 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 MAN1A1P33908 653 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 FUT2Q10981 343 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 MAP7Q14244 749 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 NACC1Q96RE7 527 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 STK33Q9BYT3 514 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 SMYD3Q9H7B4 428 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 TRIM33Q9UPN9 1127 aa13.72□□□□□ -0.21
SHOX2-205ENST00000490689 hCG_1984214I3L0E3 225 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 FOSP01100 380 aaPredicted RBP13.71□□□□□ -0.21
SHOX2-205ENST00000490689 POLR2MP0CAP2 368 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 OVGP1Q12889 678 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 ZNF713Q8N859 430 aaPredicted RBP13.71□□□□□ -0.21
SHOX2-205ENST00000490689 TRIM55Q9BYV6 548 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 CARD9Q9H257 536 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 TRABDQ9H4I3 376 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 PCDHB4Q9Y5E5 795 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 STK24Q9Y6E0 443 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 TESPA1A2RU30 521 aaPredicted RBP13.71□□□□□ -0.21
SHOX2-205ENST00000490689 PEX3P56589 373 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 DNAJC9Q8WXX5 260 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 TEKT1Q969V4 418 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 SNF8Q96H20 258 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 TMEM237Q96Q45 408 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 G3BP2Q9UN86 482 aaKnown RBP13.71□□□□□ -0.21
SHOX2-205ENST00000490689 PCDHGC5Q9Y5F6 944 aa13.71□□□□□ -0.21
SHOX2-205ENST00000490689 MYH10P35580 1976 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 FOXN3O00409 490 aaPredicted RBP13.71□□□□□ -0.22
SHOX2-205ENST00000490689 CPA2P48052 419 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 GPS1Q13098 491 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 SBK1Q52WX2 424 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 WDR78Q5VTH9 848 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 TXNRD3Q86VQ6 643 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 NEUROG2Q9H2A3 272 aa13.71□□□□□ -0.22
SHOX2-205ENST00000490689 CDH16O75309 829 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 CD58P19256 250 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 FXR2P51116 673 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 ITGA8P53708 1063 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 SLC8A3P57103 927 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 EDRF1Q3B7T1 1238 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 ZNF394Q53GI3 561 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 C3orf20Q8ND61 904 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 RBM17Q96I25 401 aaKnown RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 FGD4Q96M96 766 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 RBM15Q96T37 977 aaKnown RBP eCLIP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 TEKT3Q9BXF9 490 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 METTL5Q9NRN9 209 aaKnown RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 APEX2Q9UBZ4 518 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 ZBTB12Q9Y330 459 aaPredicted RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 PALM3A6NDB9 673 aaPredicted RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 TMEM253P0C7T8 217 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 PSMC4P43686 418 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 PPP2R5CQ13362 524 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 SMAD1Q15797 465 aaKnown RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 GSDMBQ8TAX9 411 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 PEAK1Q9H792 1746 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 ATP5HO75947 161 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 KRT19P08727 400 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 UBTFL6P0CB48 400 aaPredicted RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 DRD4P21917 467 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 EPHB1P54762 984 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 OGFOD1Q8N543 542 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 TEKT4Q8WW24 435 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 NAF1Q96HR8 494 aaKnown RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 EIF2AK1Q9BQI3 630 aaKnown RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 CDC42EP4Q9H3Q1 356 aaKnown RBP13.7□□□□□ -0.22
SHOX2-205ENST00000490689 PNMA3Q9UL41 463 aa13.7□□□□□ -0.22
SHOX2-205ENST00000490689 NKRFO15226 690 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHOX2-205ENST00000490689 MED24O75448 989 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 TRPA1O75762 1119 aa13.69□□□□□ -0.22
SHOX2-205ENST00000490689 PDIA2Q13087 525 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms