RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 LONP2Q86WA8 852 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 SAMD3Q8N6K7 520 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 FGF13Q92913 245 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 PHKBQ93100 1093 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 ZKSCAN3Q9BRR0 538 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 MRPL9Q9BYD2 267 aaKnown RBP8.34□□□□□ -1.07
COL9A1-209ENST00000489861 PRKD2Q9BZL6 878 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 ADAMTS10Q9H324 1103 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 LMAN1LQ9HAT1 526 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 TBC1D13Q9NVG8 400 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 MRPS17Q9Y2R5 130 aaKnown RBP8.34□□□□□ -1.07
COL9A1-209ENST00000489861 ZFP37Q9Y6Q3 630 aaPredicted RBP8.34□□□□□ -1.07
COL9A1-209ENST00000489861 MYO9AB2RTY4 2548 aa8.34□□□□□ -1.07
COL9A1-209ENST00000489861 PTPRQQ9UMZ3 2332 aa8.34□□□□□ -1.08
COL9A1-209ENST00000489861 A0A0U1RQF3 1178 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 GPR32O75388 356 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 CEACAM1P13688 526 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 MX1P20591 662 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 RAP1GAPP47736 663 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 CRYBB1P53674 252 aaPredicted RBP8.33□□□□□ -1.08
COL9A1-209ENST00000489861 AK2P54819 239 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 CCDC178Q5BJE1 867 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 TSHZ3Q63HK5 1081 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 MTSS1LQ765P7 747 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 TAS1R1Q7RTX1 841 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 GRASPQ7Z6J2 395 aaPredicted RBP8.33□□□□□ -1.08
COL9A1-209ENST00000489861 ZNF280BQ86YH2 543 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 STAG2Q8N3U4 1231 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 PNMA1Q8ND90 353 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 HNRNPLLQ8WVV9 542 aaKnown RBP8.33□□□□□ -1.08
COL9A1-209ENST00000489861 EVI5LQ96CN4 794 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 MTMR8Q96EF0 704 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 PLA2G2FQ9BZM2 168 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 MRPL17Q9NRX2 175 aaKnown RBP8.33□□□□□ -1.08
COL9A1-209ENST00000489861 PKD2L1Q9P0L9 805 aa8.33□□□□□ -1.08
COL9A1-209ENST00000489861 DOPEY2Q9Y3R5 2298 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 ANKRD17O75179 2603 aaKnown RBP8.32□□□□□ -1.08
COL9A1-209ENST00000489861 MEIS3P2A8K0S8 358 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 SMARCA5O60264 1052 aaPredicted RBP8.32□□□□□ -1.08
COL9A1-209ENST00000489861 VTNP04004 478 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 ADH1AP07327 375 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 CSRP1P21291 193 aaKnown RBP8.32□□□□□ -1.08
COL9A1-209ENST00000489861 SLC35G1Q2M3R5 365 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 LONRF3Q496Y0 759 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 ASPRV1Q53RT3 343 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 ZMYM1Q5SVZ6 1142 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 C20orf194Q5TEA3 1177 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 KBTBD6Q86V97 674 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 PALB2Q86YC2 1186 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 GIMAP8Q8ND71 665 aaPredicted RBP8.32□□□□□ -1.08
COL9A1-209ENST00000489861 ITFG1Q8TB96 612 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 LPPQ93052 612 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 LRIG1Q96JA1 1093 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 LOXL4Q96JB6 756 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 RPS6KC1Q96S38 1066 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 IER2Q9BTL4 223 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 EDEM2Q9BV94 578 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 PHF20Q9BVI0 1012 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 GBP3Q9H0R5 595 aa8.32□□□□□ -1.08
COL9A1-209ENST00000489861 RNF41Q9H4P4 317 aaPredicted RBP8.32□□□□□ -1.08
COL9A1-209ENST00000489861 THADAQ6YHU6 1953 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 COL12A1Q99715 3063 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 ZBTB42B2RXF5 422 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 ZBTB5O15062 677 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 TGM5O43548 720 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 SEC24BO95487 1268 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 CHRNB1P11230 501 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 ZSCAN20P17040 1043 aaPredicted RBP8.31□□□□□ -1.08
COL9A1-209ENST00000489861 ITGB5P18084 799 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 MPLP40238 635 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 WDR44Q5JSH3 913 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 PCNX4Q63HM2 1172 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 LILRA6Q6PI73 481 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 PLPPR4Q7Z2D5 763 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 SPEM1Q8N4L4 309 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 DEFB124Q8NES8 71 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 HDAC7Q8WUI4 952 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 PLEKHA4Q9H4M7 779 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 RXFP1Q9HBX9 757 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 HELLSQ9NRZ9 838 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 ZDHHC7Q9NXF8 308 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 DPP7Q9UHL4 492 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 RAI2Q9Y5P3 530 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 DOPEY1Q5JWR5 2465 aa8.31□□□□□ -1.08
COL9A1-209ENST00000489861 ZMYM6O95789 1325 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 PTPRBP23467 1997 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 FAM221BA6H8Z2 402 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 TRIM6-TRIM34B2RNG4 842 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 HIP1O00291 1037 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 GAS2O43903 313 aaKnown RBP8.3□□□□□ -1.08
COL9A1-209ENST00000489861 ZMYND10O75800 440 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 DDHD2O94830 711 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 PAPSS2O95340 614 aaPredicted RBP8.3□□□□□ -1.08
COL9A1-209ENST00000489861 EFEMP2O95967 443 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 SOD2P04179 222 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 PARP1P09874 1014 aaKnown RBP8.3□□□□□ -1.08
COL9A1-209ENST00000489861 FGFR4P22455 802 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 STAT5BP51692 787 aa8.3□□□□□ -1.08
COL9A1-209ENST00000489861 AFF1P51825 1210 aaKnown RBP8.3□□□□□ -1.08
COL9A1-209ENST00000489861 SCAPQ12770 1279 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms