RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 KRT37O76014 449 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 HKR1P10072 659 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 SEC24CP53992 1094 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 ADCY1Q08828 1119 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 LRP10Q7Z4F1 713 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 GDF7Q7Z4P5 450 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 HDGFL2Q7Z4V5 671 aaPredicted RBP5.23□□□□□ -1.57
SMC4-220ENST00000488017 BRAPQ7Z569 592 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 MRPL4Q9BYD3 311 aaKnown RBP5.23□□□□□ -1.57
SMC4-220ENST00000488017 CPEB1Q9BZB8 566 aaKnown RBP5.23□□□□□ -1.57
SMC4-220ENST00000488017 PCIF1Q9H4Z3 704 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 TRPM5Q9NZQ8 1165 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 CLCA2Q9UQC9 943 aa5.23□□□□□ -1.57
SMC4-220ENST00000488017 DIRC3C9JPN6 131 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 C1RP00736 705 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 CTGFP29279 349 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 APOBEC3AP31941 199 aaPredicted RBP5.22□□□□□ -1.57
SMC4-220ENST00000488017 ADCY2Q08462 1091 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 MICALCLQ6ZW33 695 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 CMTR2Q8IYT2 770 aaKnown RBP5.22□□□□□ -1.57
SMC4-220ENST00000488017 UNC5BQ8IZJ1 945 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 FAM98AQ8NCA5 519 aaKnown RBP5.22□□□□□ -1.57
SMC4-220ENST00000488017 SIMC1Q8NDZ2 872 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 CAVIN3Q969G5 261 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 EPC1Q9H2F5 836 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 SIRPGQ9P1W8 387 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 CHST2Q9Y4C5 530 aa5.22□□□□□ -1.57
SMC4-220ENST00000488017 PIPSLA2A3N6 862 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 CCDC85CA6NKD9 419 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 NCR1O76036 304 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 ONECUT2O95948 504 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 GAAP10253 952 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 PTTG1IPP53801 180 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 MRPL49Q13405 166 aaKnown RBP5.21□□□□□ -1.58
SMC4-220ENST00000488017 BEAN1Q3B7T3 259 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 TIGD7Q6NT04 549 aaPredicted RBP5.21□□□□□ -1.58
SMC4-220ENST00000488017 DDX53Q86TM3 631 aaKnown RBP5.21□□□□□ -1.58
SMC4-220ENST00000488017 PLXDC1Q8IUK5 500 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 CHST14Q8NCH0 376 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 PPP1R14CQ8TAE6 165 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 SLC9A6Q92581 669 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 SOX7Q9BT81 388 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 LSM14BQ9BX40 385 aaKnown RBP5.21□□□□□ -1.58
SMC4-220ENST00000488017 MTG2Q9H4K7 406 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 RSAD1Q9HA92 442 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 ING3Q9NXR8 418 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 HDAC5Q9UQL6 1122 aa5.21□□□□□ -1.58
SMC4-220ENST00000488017 TNPO3Q9Y5L0 923 aaKnown RBP5.21□□□□□ -1.58
SMC4-220ENST00000488017 B4E1Z4 1266 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 H7C1D1 291 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 OPHN1O60890 802 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 ALDH1A2O94788 518 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 NDUFA10O95299 355 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 CXCR5P32302 372 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 FOXI1Q12951 378 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 ZNF174Q15697 407 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 ABHD17BQ5VST6 288 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 FGD2Q7Z6J4 655 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 PHYKPLQ8IUZ5 450 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 KIAA1958Q8N8K9 716 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 BOLLQ8N9W6 283 aaKnown RBP5.2□□□□□ -1.58
SMC4-220ENST00000488017 OR5M3Q8NGP4 307 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 IL17RAQ96F46 866 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 HIST1H2AHQ96KK5 128 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 HIST1H2AJQ99878 128 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 BRIP1Q9BX63 1249 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 TRIM39Q9HCM9 518 aa5.2□□□□□ -1.58
SMC4-220ENST00000488017 M0R2C6 588 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 CFBP00751 764 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 ZSCAN20P17040 1043 aaPredicted RBP5.19□□□□□ -1.58
SMC4-220ENST00000488017 GUCY1B3Q02153 619 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 KIAA1841Q6NSI8 718 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 GPRIN1Q7Z2K8 1008 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 NOL10Q9BSC4 688 aaKnown RBP5.19□□□□□ -1.58
SMC4-220ENST00000488017 LRFN3Q9BTN0 628 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 SPATA5L1Q9BVQ7 753 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 KRTAP1-5Q9BYS1 174 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 FRMD4BQ9Y2L6 1034 aa5.19□□□□□ -1.58
SMC4-220ENST00000488017 PRR5-ARHGAP8B1AHC4 643 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 ESRRBO95718 433 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 CASRP41180 1078 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 GZMKP49863 264 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 DDB1Q16531 1140 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 ZCCHC8Q6NZY4 707 aaKnown RBP5.18□□□□□ -1.58
SMC4-220ENST00000488017 DRICH1Q6PGQ1 229 aaPredicted RBP5.18□□□□□ -1.58
SMC4-220ENST00000488017 C7orf31Q8N865 590 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 PIK3C3Q8NEB9 887 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 ZSWIM2Q8NEG5 633 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 CAGE1Q8TC20 777 aa5.18□□□□□ -1.58
SMC4-220ENST00000488017 PTPDC1A2A3K4 754 aa5.17□□□□□ -1.58
SMC4-220ENST00000488017 LEFTY2O00292 366 aa5.17□□□□□ -1.58
SMC4-220ENST00000488017 GLRX3O76003 335 aaKnown RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 PRPF6O94906 941 aaKnown RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 HLA-DOAP06340 250 aa5.17□□□□□ -1.58
SMC4-220ENST00000488017 HSP90B1P14625 803 aaKnown RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 PTX3P26022 381 aaPredicted RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 CPEB3Q8NE35 698 aaKnown RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 ALG13Q9NP73 1137 aaKnown RBP5.17□□□□□ -1.58
SMC4-220ENST00000488017 CABP5Q9NP86 173 aa5.17□□□□□ -1.58
SMC4-220ENST00000488017 SAMD15Q9P1V8 674 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms