RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 KCNG4Q8TDN1 519 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 PPM1EQ8WY54 764 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 LPPQ93052 612 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 SAMD11Q96NU1 681 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 TIPINQ9BVW5 301 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 PRMT7Q9NVM4 692 aaPredicted RBP16.3■□□□□ 0.2
USP4-212ENST00000486549 THEGQ9P2T0 379 aa16.3■□□□□ 0.2
USP4-212ENST00000486549 MRPL42Q9Y6G3 142 aaKnown RBP16.3■□□□□ 0.2
USP4-212ENST00000486549 HOXA2O43364 376 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 CUTAO60888 179 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 PRKCBP05771 671 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 SKIP12755 728 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 ATF7P17544 494 aaPredicted RBP16.29■□□□□ 0.2
USP4-212ENST00000486549 ARF4P18085 180 aaPredicted RBP16.29■□□□□ 0.2
USP4-212ENST00000486549 AXLP30530 894 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 RAB27AP51159 221 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 EPC2Q52LR7 807 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 ARSHQ5FYA8 562 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 UBXN11Q5T124 520 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 SPOUT1Q5T280 376 aaKnown RBP16.29■□□□□ 0.2
USP4-212ENST00000486549 TMEM192Q8IY95 271 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 PDILTQ8N807 584 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 HELQQ8TDG4 1101 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 KMT5AQ9NQR1 393 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 RNF19AQ9NV58 838 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 KCND2Q9NZV8 630 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 USP20Q9Y2K6 914 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 PCDHB2Q9Y5E7 798 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 TCHHQ07283 1943 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 TRANK1O15050 2925 aa16.29■□□□□ 0.2
USP4-212ENST00000486549 MEIS3P2A8K0S8 358 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 EOMESO95936 686 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 DDIT3P35638 169 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 STAT6P42226 847 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 NPTX2P47972 431 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 MRPS5P82675 430 aaKnown RBP16.28■□□□□ 0.2
USP4-212ENST00000486549 PRPF4BQ13523 1007 aaKnown RBP16.28■□□□□ 0.2
USP4-212ENST00000486549 MAPK6Q16659 721 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 CLLU1OSQ5K130 101 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 CCDC73Q6ZRK6 1079 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 ZNF598Q86UK7 904 aaKnown RBP16.28■□□□□ 0.2
USP4-212ENST00000486549 MICALL1Q8N3F8 863 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 REEP2Q9BRK0 252 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 TRAIPQ9BWF2 469 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 COL25A1Q9BXS0 654 aaPredicted RBP16.28■□□□□ 0.2
USP4-212ENST00000486549 EIF2AQ9BY44 585 aaKnown RBP16.28■□□□□ 0.2
USP4-212ENST00000486549 TMEM117Q9H0C3 514 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 CCDC113Q9H0I3 377 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 HCSTQ9UBK5 93 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 STK17AQ9UEE5 414 aa16.28■□□□□ 0.2
USP4-212ENST00000486549 CNTNAP2Q9UHC6 1331 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 A0A087X0B3 334 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 TTLL13PA6NNM8 815 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 SLC16A4O15374 487 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 FAM13AO94988 1023 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 NPTXRO95502 500 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 EDN1P05305 212 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 LINC00271P0C7V0 271 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 PLS3P13797 630 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 EFNA5P52803 228 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 KRT85P78386 507 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 CCDC85BQ15834 202 aaPredicted RBP16.27■□□□□ 0.2
USP4-212ENST00000486549 NAALADL2Q58DX5 795 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 SHC4Q6S5L8 630 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 PGBD4Q96DM1 585 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 CCDC51Q96ER9 411 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 PRIMPOLQ96LW4 560 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 CASD1Q96PB1 797 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 APOL6Q9BWW8 343 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 TRIM6Q9C030 488 aaPredicted RBP16.27■□□□□ 0.2
USP4-212ENST00000486549 FZD8Q9H461 694 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 ZHX3Q9H4I2 956 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 PCDHA7Q9UN72 937 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 INPP5FQ9Y2H2 1132 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 RWDD3Q9Y3V2 267 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 ATP6V1DQ9Y5K8 247 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 MTCH2Q9Y6C9 303 aa16.27■□□□□ 0.2
USP4-212ENST00000486549 UNC80Q8N2C7 3258 aa16.27■□□□□ 0.19
USP4-212ENST00000486549 PHLPP2Q6ZVD8 1323 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 K7ERI5 159 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 ACKR2O00590 384 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 LPXNO60711 386 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 ZNF623O75123 536 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 TBCAO75347 108 aaKnown RBP16.26■□□□□ 0.19
USP4-212ENST00000486549 BMPR1AP36894 532 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 GPM6BQ13491 265 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 SKIV2LQ15477 1246 aaKnown RBP16.26■□□□□ 0.19
USP4-212ENST00000486549 FAM187BQ17R55 369 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 AXDND1Q5T1B0 1012 aaPredicted RBP16.26■□□□□ 0.19
USP4-212ENST00000486549 SLC27A1Q6PCB7 646 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 SV2BQ7L1I2 683 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 LRRC43Q8N309 656 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 CLP1Q92989 425 aaKnown RBP16.26■□□□□ 0.19
USP4-212ENST00000486549 SPATA32Q96LK8 384 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 C17orf75Q9HAS0 396 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 TYW1Q9NV66 732 aaKnown RBP16.26■□□□□ 0.19
USP4-212ENST00000486549 RCOR1Q9UKL0 485 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 ODF2LQ9ULJ1 636 aa16.26■□□□□ 0.19
USP4-212ENST00000486549 COG5Q9UP83 839 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms