RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 PCDHB2Q9Y5E7 798 aa14.59□□□□□ -0.07
HDAC6-227ENST00000485102 VPS13AQ96RL7 3174 aa14.59□□□□□ -0.07
HDAC6-227ENST00000485102 INPPL1O15357 1258 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 ASAP2O43150 1006 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 GAS2O43903 313 aaKnown RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 B4GALT3O60512 393 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 EIF5BO60841 1220 aaKnown RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 EFEMP2O95967 443 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 CNPP09543 421 aaKnown RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 CA8P35219 290 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 CCT2P78371 535 aaKnown RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 SSRP1Q08945 709 aaKnown RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 TDGQ13569 410 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 PCBP1Q15365 356 aaKnown RBP eCLIP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 PPP4R3AQ6IN85 833 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 KANK3Q6NY19 840 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 TMC5Q6UXY8 1006 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 CCDC149Q6ZUS6 474 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 SKAP1Q86WV1 359 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 KSR1Q8IVT5 923 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 CNNM3Q8NE01 707 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 URGCPQ8TCY9 931 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 SLC7A3Q8WY07 619 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 SH2D3AQ9BRG2 576 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 SMOC2Q9H3U7 446 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 NCOA5Q9HCD5 579 aaKnown RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 KCNMB3Q9NPA1 279 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 IGSF9Q9P2J2 1179 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 SSX2IPQ9Y2D8 614 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 INPP5FQ9Y2H2 1132 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 COL4A3BPQ9Y5P4 624 aa14.58□□□□□ -0.08
HDAC6-227ENST00000485102 EP300Q09472 2414 aaPredicted RBP14.58□□□□□ -0.08
HDAC6-227ENST00000485102 PRR23AA6NEV1 266 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 EML1O00423 815 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 DDHD2O94830 711 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 P4HBP07237 508 aaKnown RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 RFC5P40937 340 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 TOB2Q14106 344 aaPredicted RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 NONOQ15233 471 aaKnown RBP eCLIP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 UBXN11Q5T124 520 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 RUFY3Q7L099 469 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 ASCL5Q7RTU5 278 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 KRT25Q7Z3Z0 450 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 C4orf19Q8IY42 314 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 GPR65Q8IYL9 337 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 RNF168Q8IYW5 571 aaPredicted RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 PRPF31Q8WWY3 499 aaKnown RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 PSPC1Q8WXF1 523 aaKnown RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 NLRP4Q96MN2 994 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 RSAD1Q9HA92 442 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 ZSWIM6Q9HCJ5 1215 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 UBN1Q9NPG3 1134 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 MRPL17Q9NRX2 175 aaKnown RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 DDX25Q9UHL0 483 aaKnown RBP14.57□□□□□ -0.08
HDAC6-227ENST00000485102 DPP7Q9UHL4 492 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 VAV3Q9UKW4 847 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 FAN1Q9Y2M0 1017 aa14.57□□□□□ -0.08
HDAC6-227ENST00000485102 C2orf16Q68DN1 1984 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 NRP1O14786 923 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 TBX3O15119 743 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 REC8O95072 547 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 SOD2P04179 222 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 GCFC2P16383 781 aaKnown RBP14.56□□□□□ -0.08
HDAC6-227ENST00000485102 NPR3P17342 541 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 NCLP19338 710 aaKnown RBP14.56□□□□□ -0.08
HDAC6-227ENST00000485102 AOC1P19801 751 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 KLRC2P26717 231 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 POU5F1BQ06416 359 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 LETM2Q2VYF4 491 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 LONRF3Q496Y0 759 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 HDAC7Q8WUI4 952 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 MFSD1Q9H3U5 465 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 MINDY3Q9H8M7 445 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 KCNK12Q9HB15 430 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 DUSP12Q9UNI6 340 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 DOCK8Q8NF50 2099 aa14.56□□□□□ -0.08
HDAC6-227ENST00000485102 CPLX1O14810 134 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 SLC37A4O43826 429 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 AXLP30530 894 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 AFF1P51825 1210 aaKnown RBP14.55□□□□□ -0.08
HDAC6-227ENST00000485102 NPEPPSP55786 919 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 DSC1Q08554 894 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 LAMTOR4Q0VGL1 99 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 EPHA7Q15375 998 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 INF2Q27J81 1249 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 PLA2G4FQ68DD2 849 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 CWF19L1Q69YN2 538 aaKnown RBP14.55□□□□□ -0.08
HDAC6-227ENST00000485102 CPLX2Q6PUV4 134 aaKnown RBP14.55□□□□□ -0.08
HDAC6-227ENST00000485102 IFNLR1Q8IU57 520 aaPredicted RBP14.55□□□□□ -0.08
HDAC6-227ENST00000485102 FEZF2Q8TBJ5 459 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 TCP11Q8WWU5 503 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 NXPE3Q969Y0 559 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 CCDC51Q96ER9 411 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 CEP170P1Q96L14 293 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 FAM193BQ96PV7 902 aaPredicted RBP14.55□□□□□ -0.08
HDAC6-227ENST00000485102 RPS6KC1Q96S38 1066 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 RTP3Q9BQQ7 232 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 TM6SF1Q9BZW5 370 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 GBP3Q9H0R5 595 aa14.55□□□□□ -0.08
HDAC6-227ENST00000485102 RXFP1Q9HBX9 757 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms