RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 GPBP1Q86WP2 473 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 WHAMMQ8TF30 809 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 TRIM51Q9BSJ1 452 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 RUSC1Q9BVN2 902 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 TSKSQ9UJT2 592 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 CCNL1Q9UK58 526 aaPredicted RBP9.05□□□□□ -0.96
VAPB-205ENST00000476395 HDAC9Q9UKV0 1011 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 PCDHA12Q9UN75 941 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 PCDHA3Q9Y5H8 950 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 MYH11P35749 1972 aa9.05□□□□□ -0.96
VAPB-205ENST00000476395 KLRG2A4D1S0 409 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 EML1O00423 815 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 SART1O43290 800 aaKnown RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 LRRN2O75325 713 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 RTN3O95197 1032 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 PPATQ06203 517 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 ZNF268Q14587 947 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 APOBEC3HQ6NTF7 200 aaKnown RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 LONP2Q86WA8 852 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 ARFGAP2Q8N6H7 521 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 CNBD1Q8NA66 436 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 B4GALNT2Q8NHY0 566 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 EZH1Q92800 747 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 TSC22D3Q99576 134 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 OSGEPQ9NPF4 335 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 COG5Q9UP83 839 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 C2CD2Q9Y426 696 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.04□□□□□ -0.96
VAPB-205ENST00000476395 PITPNM2Q9BZ72 1349 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 H0Y3Z8 333 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 MEIS1O00470 390 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 ZBTB39O15060 712 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TP73O15350 636 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TTI1O43156 1089 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TTLL1O95922 423 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 KLHL30Q0D2K2 578 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TRAF1Q13077 416 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 QRICH1Q2TAL8 776 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TRIM74Q86UV6 250 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TRIM73Q86UV7 250 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 SFR1Q86XK3 245 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 EIF1ADQ8N9N8 165 aaKnown RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 ATXN2LQ8WWM7 1075 aaKnown RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 FAM129AQ9BZQ8 928 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 ZDHHC18Q9NUE0 388 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 WRAP73Q9P2S5 460 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 SWAP70Q9UH65 585 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 NOC2LQ9Y3T9 749 aaKnown RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 RGPD3A6NKT7 1758 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 RGPD4Q7Z3J3 1758 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 FESP07332 822 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 GHRP10912 638 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 CREB1P16220 341 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 NR2F2P24468 414 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 SNAP25P60880 206 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 PICALMQ13492 652 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 RRP1BQ14684 758 aaKnown RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 COG2Q14746 738 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TMEM266Q2M3C6 531 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 ZNF772Q68DY9 489 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 CRELD2Q6UXH1 353 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 KRT27Q7Z3Y8 459 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 SYT2Q8N9I0 419 aaPredicted RBP9.04□□□□□ -0.96
VAPB-205ENST00000476395 RPS6KC1Q96S38 1066 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 TANGO6Q9C0B7 1094 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 CCDC113Q9H0I3 377 aa9.04□□□□□ -0.96
VAPB-205ENST00000476395 ECEL1O95672 775 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 LDHCP07864 332 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 PAEPP09466 180 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 GYS1P13807 737 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 HOXA7P31268 230 aaPredicted RBP9.03□□□□□ -0.96
VAPB-205ENST00000476395 C16orf87Q6PH81 154 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 TMC3Q7Z5M5 1100 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 FRMD5Q7Z6J6 570 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 LMO3Q8TAP4 145 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 UCMAQ8WVF2 138 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 CNKSR1Q969H4 720 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 NAF1Q96HR8 494 aaKnown RBP9.03□□□□□ -0.96
VAPB-205ENST00000476395 PSTPIP2Q9H939 334 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 KCNQ5Q9NR82 932 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 TAS2R14Q9NYV8 317 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 PPP1R9AQ9ULJ8 1098 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 IGLV3-22A0A075B6J6 115 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 F8VZ95 297 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 CEP104O60308 925 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 FGFR1OPO95684 399 aaKnown RBP9.03□□□□□ -0.96
VAPB-205ENST00000476395 GM2AP17900 193 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 RFC5P40937 340 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 HERC4Q5GLZ8 1057 aaPredicted RBP9.03□□□□□ -0.96
VAPB-205ENST00000476395 FAM196AQ6ZSG2 479 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 TEKT4Q8WW24 435 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 KLHL29Q96CT2 875 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 UBE2OQ9C0C9 1292 aaKnown RBP9.03□□□□□ -0.96
VAPB-205ENST00000476395 PCMTD2Q9NV79 361 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 FAM196BA6NMK8 535 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 RNF8O76064 485 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 FAM163BP0C2L3 166 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 NEFHP12036 1026 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 ALADP13716 330 aa9.03□□□□□ -0.96
VAPB-205ENST00000476395 ATP2A2P16615 1042 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms