RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MRPL49Q13405 166 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 PAPD7Q5XG87 772 aaKnown RBP5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 KIAA1841Q6NSI8 718 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 CCDC62Q6P9F0 684 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 ARHGEF19Q8IW93 802 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 UNC5BQ8IZJ1 945 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 CPPED1Q9BRF8 314 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 FDXACB1Q9BRP7 624 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 POFUT1Q9H488 388 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 ZMAT4Q9H898 229 aa5.25□□□□□ -1.57
CCDC88A-212ENST00000474059 DAPK3O43293 454 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 DNAJC6O75061 913 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 NCR1O76036 304 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 GYPEP15421 78 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 PTH2RP49190 550 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 TAP1Q03518 808 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 CD69Q07108 199 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 BEAN1Q3B7T3 259 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 NAALADL2Q58DX5 795 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 LILRB2Q8N423 598 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 MSL3Q8N5Y2 521 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 ZSWIM2Q8NEG5 633 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 RPGRQ92834 1020 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 UIMC1Q96RL1 719 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 ADAM2Q99965 735 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 PCIF1Q9H4Z3 704 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 B4GALT6Q9UBX8 382 aa5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 TNPO3Q9Y5L0 923 aaKnown RBP5.24□□□□□ -1.57
CCDC88A-212ENST00000474059 CCDC163A0A0D9SF12 145 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 CBX4O00257 560 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 PPFIA4O75335 1185 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 ALDH1A2O94788 518 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 LY86O95711 162 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 ZSCAN20P17040 1043 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 PRR16Q569H4 304 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 DOK3Q7L591 496 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 RD3Q7Z3Z2 195 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 DDX53Q86TM3 631 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 NME9Q86XW9 330 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 RTF1Q92541 710 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 AKIP1Q9NQ31 210 aa5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 H2AFY2Q9P0M6 372 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 EIF2B4Q9UI10 523 aaKnown RBP5.23□□□□□ -1.57
CCDC88A-212ENST00000474059 MARCH11A6NNE9 402 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 KRTAP29-1A8MX34 341 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 H7C1D1 291 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 PLD2O14939 933 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 RECQL4O94761 1208 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 SEC24DO94855 1032 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 SEC24CP53992 1094 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 RBL2Q08999 1139 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 C2orf27AQ580R0 203 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 ZBTB41Q5SVQ8 909 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 STRIP1Q5VSL9 837 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 METRNLQ641Q3 311 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 GDF7Q7Z4P5 450 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 XYLT1Q86Y38 959 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 PHYKPLQ8IUZ5 450 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 NOL10Q9BSC4 688 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 CYP4F11Q9HBI6 524 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 TRPM5Q9NZQ8 1165 aa5.22□□□□□ -1.57
CCDC88A-212ENST00000474059 FSBPO95073 299 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 SDSP20132 328 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 CD38P28907 300 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 IGFALSP35858 605 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 LCE1AQ5T7P2 110 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 FBXO42Q6P3S6 717 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 GLB1L3Q8NCI6 653 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 SPO11Q9Y5K1 396 aa5.21□□□□□ -1.58
CCDC88A-212ENST00000474059 FAM83GA6ND36 823 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 NRP1O14786 923 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 WNT3AP56704 352 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 ADCY1Q08828 1119 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 SCAPQ12770 1279 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 MAN2A1Q16706 1144 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 IQSEC1Q6DN90 963 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 FAM83AQ86UY5 434 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 C7orf31Q8N865 590 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 SIMC1Q8NDZ2 872 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 ASB10Q8WXI3 467 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 IL17RAQ96F46 866 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 NEU1Q99519 415 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 TANGO6Q9C0B7 1094 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 INTS7Q9NVH2 962 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 OXSMQ9NWU1 459 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 PODXL2Q9NZ53 605 aa5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 ARHGEF17Q96PE2 2063 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-212ENST00000474059 A0A1W2PR48 441 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 PIPSLA2A3N6 862 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 RNASET2O00584 256 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 NDUFA10O95299 355 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 ASLP04424 464 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 PFKMP08237 780 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 ATP2B1P20020 1258 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 BMPR1AP36894 532 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 PLA2G5P39877 138 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 RNASE9P60153 205 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 ZNF174Q15697 407 aa5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 ZNF362Q5T0B9 420 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-212ENST00000474059 PIK3R6Q5UE93 754 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms