RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 SLC11A1P49279 550 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 ALDH7A1P49419 539 aaKnown RBP18.56■□□□□ 0.56
USP40-212ENST00000473191 KRT17Q04695 432 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 MBTD1Q05BQ5 628 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 ECM1Q16610 540 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 AMHR2Q16671 573 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 SYCE2Q6PIF2 218 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 POTEGQ6S5H5 508 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 GLB1LQ6UWU2 654 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 MRPL10Q7Z7H8 261 aaKnown RBP18.56■□□□□ 0.56
USP40-212ENST00000473191 POLR3FQ9H1D9 316 aaPredicted RBP18.56■□□□□ 0.56
USP40-212ENST00000473191 S1PR5Q9H228 398 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 POLD4Q9HCU8 107 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 PUF60Q9UHX1 559 aaKnown RBP18.56■□□□□ 0.56
USP40-212ENST00000473191 GAS2O43903 313 aaKnown RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 EIF5BO60841 1220 aaKnown RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 DGAT1O75907 488 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 TOB1P50616 345 aaPredicted RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 RAB27AP51159 221 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 SAFBQ15424 915 aaKnown RBP eCLIP18.55■□□□□ 0.56
USP40-212ENST00000473191 PDE12Q6L8Q7 609 aaKnown RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 ANKRD54Q6NXT1 300 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 KANK3Q6NY19 840 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 TMEM184AQ6ZMB5 413 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 RNF135Q8IUD6 432 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 EXOC8Q8IYI6 725 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 VPS52Q8N1B4 723 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 C4orf32Q8N8J7 132 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 MRPL43Q8N983 215 aaKnown RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 IGSF21Q96ID5 467 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 ZBP1Q9H171 429 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 FOXP1Q9H334 677 aaPredicted RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 NGRNQ9NPE2 291 aaKnown RBP18.55■□□□□ 0.56
USP40-212ENST00000473191 MIOSQ9NXC5 875 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 IPPQ9Y573 584 aa18.55■□□□□ 0.56
USP40-212ENST00000473191 TTLL13PA6NNM8 815 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 INO80B-WBP1J3KQ70 363 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 ASAP2O43150 1006 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 DCXO43602 365 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 CLASP2O75122 1294 aaKnown RBP18.54■□□□□ 0.56
USP40-212ENST00000473191 OR52Z1P0C646 297 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 SKIP12755 728 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 CA8P35219 290 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 RBM25P49756 843 aaKnown RBP18.54■□□□□ 0.56
USP40-212ENST00000473191 TTC38Q5R3I4 469 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 BSNDQ8WZ55 320 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 SUSD6Q92537 303 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 ZSCAN31Q96LW9 406 aaPredicted RBP18.54■□□□□ 0.56
USP40-212ENST00000473191 CDCA3Q99618 268 aaPredicted RBP18.54■□□□□ 0.56
USP40-212ENST00000473191 RSAD1Q9HA92 442 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 USP20Q9Y2K6 914 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 HCFC2Q9Y5Z7 792 aa18.54■□□□□ 0.56
USP40-212ENST00000473191 F8W810 466 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 ERLIN2O94905 339 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 CXCL14O95715 111 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 ARF4P18085 180 aaPredicted RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 NCLP19338 710 aaKnown RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 SP100P23497 879 aaPredicted RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 RNASELQ05823 741 aaKnown RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 MXD4Q14582 209 aaPredicted RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 SMC1AQ14683 1233 aaKnown RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 IFNLR1Q8IU57 520 aaPredicted RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 NOSTRINQ8IVI9 506 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 FAM184AQ8NB25 1140 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 PGBD4Q96DM1 585 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 TMEM169Q96HH4 297 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 ZFP42Q96MM3 310 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 APOL6Q9BWW8 343 aa18.53■□□□□ 0.56
USP40-212ENST00000473191 NXF3Q9H4D5 531 aaKnown RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 SH2B1Q9NRF2 756 aaPredicted RBP18.53■□□□□ 0.56
USP40-212ENST00000473191 LOC730098B7Z3J9 87 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 EDN1P05305 212 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 WEE2P0C1S8 567 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 MLH1P40692 756 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 HMGN5P82970 282 aaKnown RBP18.52■□□□□ 0.56
USP40-212ENST00000473191 DDX53Q86TM3 631 aaKnown RBP18.52■□□□□ 0.56
USP40-212ENST00000473191 RPGRIP1Q96KN7 1286 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 GAD1Q99259 594 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 POLR3CQ9BUI4 534 aaPredicted RBP18.52■□□□□ 0.56
USP40-212ENST00000473191 TUFT1Q9NNX1 390 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 MARCH5Q9NX47 278 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 PCDHB6Q9Y5E3 794 aa18.52■□□□□ 0.56
USP40-212ENST00000473191 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.51■□□□□ 0.55
USP40-212ENST00000473191 NRP1O14786 923 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 SSBP05455 408 aaKnown RBP eCLIP18.51■□□□□ 0.55
USP40-212ENST00000473191 CTSAP10619 480 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 ALADP13716 330 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 AKAP5P24588 427 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 TFDP1Q14186 410 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 IL17AQ16552 155 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 NOTUMQ6P988 496 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 TAS1R1Q7RTX1 841 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 C12orf76Q8N812 135 aaPredicted RBP18.51■□□□□ 0.55
USP40-212ENST00000473191 CCDC43Q96MW1 224 aaKnown RBP18.51■□□□□ 0.55
USP40-212ENST00000473191 CSRNP2Q9H175 543 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 CXCL16Q9H2A7 254 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 CACNG4Q9UBN1 327 aa18.51■□□□□ 0.55
USP40-212ENST00000473191 ARL5CA6NH57 179 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 LRRIQ4A6NIV6 560 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 PP2D1A8MPX8 630 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms