RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 STXBP2Q15833 593 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 TMEM270Q6UE05 265 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 ANO5Q75V66 913 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 C11orf70Q9BRQ4 267 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 PCDHB4Q9Y5E5 795 aa14.85□□□□□ -0.03
CCDC88A-211ENST00000471947 GSTTP1A0A1W2PQM5 241 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 GOLGA6L10A6NI86 522 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 PSAPP07602 524 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 PLTPP55058 493 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 BEND6Q5SZJ8 279 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 CEP85LQ5SZL2 805 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 SYCP2LQ5T4T6 812 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 PPP4R3CPQ6ZMV5 832 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 SESTD1Q86VW0 696 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 PKNOX2Q96KN3 472 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 NT5C1BQ96P26 610 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 MSTO1Q9BUK6 570 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 MRIQ9BWK5 157 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 KIAA1683Q9H0B3 1180 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 SNX24Q9Y343 169 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 PCDHA2Q9Y5H9 948 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 SCN9AQ15858 1988 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 GLI1P08151 1106 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 PLS3P13797 630 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 CIITAP33076 1130 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 HIRAP54198 1017 aaPredicted RBP14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 KCTD2Q14681 263 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 TMEM63BQ5T3F8 832 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 CCDC105Q8IYK2 499 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 GRID2IPA4D2P6 1211 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 GOLGA6CA6NDK9 693 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 ZNF862O60290 1169 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 MMEP08473 750 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 GOLGA6DP0CG33 693 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 FERP16591 822 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 TNNC1P63316 161 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 BCORQ6W2J9 1755 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 RNF149Q8NC42 400 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 DOCK2Q92608 1830 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 ZNF302Q9NR11 478 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 GOLGA6AQ9NYA3 693 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 APEX2Q9UBZ4 518 aa14.84□□□□□ -0.03
CCDC88A-211ENST00000471947 FAM153BP0C7A2 387 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 DRP2Q13474 957 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 FAM153CQ494X1 144 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 MCTP2Q6DN12 878 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 MOV10L1Q9BXT6 1211 aaKnown RBP14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 FAM153AQ9UHL3 310 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 EXOC7Q9UPT5 735 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 ATP8A1Q9Y2Q0 1164 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 LAMB2P55268 1798 aa14.83□□□□□ -0.03
CCDC88A-211ENST00000471947 DAPK3O43293 454 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 PTGER2P43116 358 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 NOVP48745 357 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 ZBTB41Q5SVQ8 909 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 RIT2Q99578 217 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 NUCKS1Q9H1E3 243 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 C1orf112Q9NSG2 853 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 HOXC10Q9NYD6 342 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 FBXO40Q9UH90 709 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 PHF20L1A8MW92 1017 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 TTI1O43156 1089 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 IFI16Q16666 785 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 CREG2Q8IUH2 290 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 TEPSINQ96N21 525 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 SCN7AQ01118 1682 aa14.83□□□□□ -0.04
CCDC88A-211ENST00000471947 PI4K2BG5E9Z4 385 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 RAD51CO43502 376 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 WEE2P0C1S8 567 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 MARCKSL1P49006 195 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 CLCN3P51790 818 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 DYNLT1P63172 113 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 KRT76Q01546 638 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 PPP2R5CQ13362 524 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 TRPC3Q13507 836 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 PPP1R7Q15435 360 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 C9orf131Q5VYM1 1079 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 IMPG2Q9BZV3 1241 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 GANQ9H2C0 597 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 EFCC1Q9HA90 598 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 AKT3Q9Y243 479 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 DDX60LQ5H9U9 1706 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 NAV1Q8NEY1 1877 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 IFNB1P01574 187 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 CCDC172P0C7W6 258 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 ATF7P17544 494 aaPredicted RBP14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 FGFR4P22455 802 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 PDE6CP51160 858 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 MIS18BP1Q6P0N0 1132 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 TMEM206Q9H813 350 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 STIM2Q9P246 746 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 TRAF3IP3Q9Y228 551 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 ZBTB22O15209 634 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 THAP12O43422 761 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 AMPD2Q01433 879 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 SMAD1Q15797 465 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 GSTA5Q7RTV2 222 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 C1orf54Q8WWF1 131 aa14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 MAGOHBQ96A72 148 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-211ENST00000471947 TBX20Q9UMR3 447 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms