RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 FASNP49327 2511 aaKnown RBP5.53□□□□□ -1.52
VPS13A-210ENST00000471439 FER1L6Q2WGJ9 1857 aa5.53□□□□□ -1.52
VPS13A-210ENST00000471439 MAST4O15021 2626 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 MYOM3Q5VTT5 1437 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 CCDC163A0A0D9SF12 145 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 ANKRD62A6NC57 917 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 FAM90A27PA6NNH2 459 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 AQP7O14520 342 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 B4GALT3O60512 393 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 MAFKO60675 156 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 CKMP06732 381 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 CELA3BP08861 270 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 IL13P35225 146 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 EPHA5P54756 1037 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 JAM2P57087 298 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 GABREP78334 506 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 SAFB2Q14151 953 aaKnown RBP eCLIP5.52□□□□□ -1.53
VPS13A-210ENST00000471439 FNDC3BQ53EP0 1204 aaKnown RBP5.52□□□□□ -1.53
VPS13A-210ENST00000471439 TM4SF20Q53R12 229 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 VASNQ6EMK4 673 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 NIM1KQ8IY84 436 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 SYNPOQ8N3V7 929 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 NINJ1Q92982 152 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 MBD6Q96DN6 1003 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 GPATCH3Q96I76 525 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 TMEM209Q96SK2 561 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 PCDH18Q9HCL0 1135 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 NGRNQ9NPE2 291 aaKnown RBP5.52□□□□□ -1.53
VPS13A-210ENST00000471439 ZFP69BQ9UJL9 534 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 SRPK3Q9UPE1 567 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 INVSQ9Y283 1065 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 ANKRD36BQ8N2N9 1353 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 USP47Q96K76 1375 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 CCDC7Q96M83 1385 aa5.52□□□□□ -1.53
VPS13A-210ENST00000471439 ACEP12821 1306 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 USP34Q70CQ2 3546 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 KIF1BO60333 1816 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 CFAP47Q6ZTR5 3102 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 NSD3Q9BZ95 1437 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 CCDC66A2RUB6 948 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 MROH6A6NGR9 719 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 RFPL3O75679 317 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 PDE6AP16499 860 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 DNM2P50570 870 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 KIF23Q02241 960 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-210ENST00000471439 PLP2Q04941 152 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 SKIDA1Q1XH10 827 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 FAM26FQ5R3K3 315 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 ZFYVE27Q5T4F4 411 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 TRMT10BQ6PF06 316 aaKnown RBP5.51□□□□□ -1.53
VPS13A-210ENST00000471439 ARHGAP36Q6ZRI8 547 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 OSTM1Q86WC4 334 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 TRIM48Q8IWZ4 208 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 NUDT10Q8NFP7 164 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 MFSD3Q96ES6 412 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 NUDT11Q96G61 164 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 YTHDC1Q96MU7 727 aaKnown RBP5.51□□□□□ -1.53
VPS13A-210ENST00000471439 GUCD1Q96NT3 240 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 SMURF1Q9HCE7 757 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 SLC39A2Q9NP94 309 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 DLL4Q9NR61 685 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 CATSPERZQ9NTU4 200 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 HSPBP1Q9NZL4 362 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 COQ6Q9Y2Z9 468 aa5.51□□□□□ -1.53
VPS13A-210ENST00000471439 A0A087X0B3 334 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 ZNF839A8K0R7 811 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 ZNF561-AS1K7EIQ3 104 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 WNT9AO14904 365 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 CELF2O95319 508 aaKnown RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 IL18BPO95998 194 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 CYP1A1P04798 512 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 PTPN1P18031 435 aaKnown RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 MC4RP32245 332 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 MASP1P48740 699 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 TMF1P82094 1093 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 NFKB2Q00653 900 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 PFKPQ01813 784 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 SEC23AQ15436 765 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 LCE5AQ5TCM9 118 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 CPZQ66K79 652 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 ABHD17CQ6PCB6 329 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 PRRT2Q7Z6L0 340 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 FILIP1Q7Z7B0 1213 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 STPG3Q8N7X2 389 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 FBXW5Q969U6 566 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 TARS2Q9BW92 718 aaKnown RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 FAM126AQ9BYI3 521 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 SLKQ9H2G2 1235 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 L2HGDHQ9H9P8 463 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 PLAAQ9Y263 795 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 TNPO3Q9Y5L0 923 aaKnown RBP5.5□□□□□ -1.53
VPS13A-210ENST00000471439 INSRP06213 1382 aa5.5□□□□□ -1.53
VPS13A-210ENST00000471439 RNF123Q5XPI4 1314 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 GPR179Q6PRD1 2367 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 TCRBV16S1A1N1A0A5B0 115 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 GPR19Q15760 415 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 TBC1D10BQ4KMP7 808 aaPredicted RBP5.49□□□□□ -1.53
VPS13A-210ENST00000471439 BTBD8Q5XKL5 378 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 CNNM4Q6P4Q7 775 aa5.49□□□□□ -1.53
VPS13A-210ENST00000471439 GPR155Q7Z3F1 870 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms