RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CNTNAP2Q9UHC6 1331 aa18.47■□□□□ 0.55
CCDC28B-204ENST00000469003 DGAT1O75907 488 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 GALTP07902 379 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 PTENP60484 403 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 PCBP1Q15365 356 aaKnown RBP eCLIP18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 UBXN11Q5T124 520 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 DDX53Q86TM3 631 aaKnown RBP18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 TMEM173Q86WV6 379 aaPredicted RBP18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 VPS52Q8N1B4 723 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 URGCPQ8TCY9 931 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 ZBP1Q9H171 429 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 KCNH6Q9H252 994 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 LIMCH1Q9UPQ0 1083 aa18.46■□□□□ 0.55
CCDC28B-204ENST00000469003 ERLIN2O94905 339 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 CXCL14O95715 111 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 AXLP30530 894 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 POU5F1BQ06416 359 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 TFDP1Q14186 410 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 SAFBQ15424 915 aaKnown RBP eCLIP18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 IFNLR1Q8IU57 520 aaPredicted RBP18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 CNNM3Q8NE01 707 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 RSAD1Q9HA92 442 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 DNAJB4Q9UDY4 337 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 HCFC2Q9Y5Z7 792 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 IRAK3Q9Y616 596 aa18.45■□□□□ 0.54
CCDC28B-204ENST00000469003 CLASP2O75122 1294 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 CTSAP10619 480 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 XRCC6P12956 609 aaKnown RBP eCLIP18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 NCLP19338 710 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 CA8P35219 290 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 SLC11A1P49279 550 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 RARRES1P49788 294 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 GIT2Q14161 759 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 TPRNQ4KMQ1 711 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 ZNF280BQ86YH2 543 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 BCL7CQ8WUZ0 217 aaPredicted RBP18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 EDAQ92838 391 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 CCDC51Q96ER9 411 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 RPGRIP1Q96KN7 1286 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 SNX27Q96L92 541 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 CCDC43Q96MW1 224 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 LLPHQ9BRT6 129 aaKnown RBP18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 APOL5Q9BWW9 433 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 GBP3Q9H0R5 595 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 TMEM60Q9H2L4 133 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 KANSL3Q9P2N6 904 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 ZNF318Q5VUA4 2279 aa18.44■□□□□ 0.54
CCDC28B-204ENST00000469003 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 POTEMA6NI47 508 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 B4GALT3O60512 393 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 TSPAN1O60635 241 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 MCM7P33993 719 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 ARL2P36404 184 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 GUCY1B3Q02153 619 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 CAPSQ13938 189 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 NOTUMQ6P988 496 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 CCDC83Q8IWF9 413 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 SMG8Q8ND04 991 aaKnown RBP18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 ASAP3Q8TDY4 903 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 PIGOQ8TEQ8 1089 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 C8orf76Q96K31 380 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 FAM193BQ96PV7 902 aaPredicted RBP18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 TMEM175Q9BSA9 504 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 NFKBIZQ9BYH8 718 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 UBN1Q9NPG3 1134 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 STK39Q9UEW8 545 aa18.43■□□□□ 0.54
CCDC28B-204ENST00000469003 INO80B-WBP1J3KQ70 363 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 DDHD2O94830 711 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 ITGA4P13612 1032 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 ATP2B1P20020 1258 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 GLRA2P23416 452 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 AFF1P51825 1210 aaKnown RBP18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 MBTD1Q05BQ5 628 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 NCBP1Q09161 790 aaKnown RBP18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 TMEM87AQ8NBN3 555 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 AUTS2Q8WXX7 1259 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 CSRNP2Q9H175 543 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 TUFT1Q9NNX1 390 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 IPPQ9Y573 584 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 TRIOO75962 3097 aa18.42■□□□□ 0.54
CCDC28B-204ENST00000469003 INPPL1O15357 1258 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 POMCP01189 267 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 ALDH2P05091 517 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 SPATA31C1P0DKV0 1188 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 ITIH3Q06033 890 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 ORC2Q13416 577 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 CES5AQ6NT32 575 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 HFE2Q6ZVN8 426 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 CPB2Q96IY4 423 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 ZSCAN31Q96LW9 406 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 VN1R3Q9BXE9 311 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 EIF2AQ9BY44 585 aaKnown RBP18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 POLR3FQ9H1D9 316 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 ADAM7Q9H2U9 754 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 FOXP1Q9H334 677 aaPredicted RBP18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 DZANK1Q9NVP4 752 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 FAN1Q9Y2M0 1017 aa18.41■□□□□ 0.54
CCDC28B-204ENST00000469003 A0A087WWV3 80 aa18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 USO1O60763 962 aaKnown RBP18.4■□□□□ 0.54
CCDC28B-204ENST00000469003 HMGN5P82970 282 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms