RNA–Protein interactions for RNA: ENST00000468807.1

TTC28-204, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-204ENST00000468807 HOXA11P31270 313 aaPredicted RBP24.22■■□□□ 1.47
TTC28-204ENST00000468807 HMGN5P82970 282 aaKnown RBP24.22■■□□□ 1.47
TTC28-204ENST00000468807 C8orf34Q49A92 452 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 UBXN11Q5T124 520 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 MAEAQ7L5Y9 396 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 TMEM173Q86WV6 379 aaPredicted RBP24.22■■□□□ 1.47
TTC28-204ENST00000468807 VPS52Q8N1B4 723 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 CPB2Q96IY4 423 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 FAM193BQ96PV7 902 aaPredicted RBP24.22■■□□□ 1.47
TTC28-204ENST00000468807 SH2B1Q9NRF2 756 aaPredicted RBP24.22■■□□□ 1.47
TTC28-204ENST00000468807 DNAJB4Q9UDY4 337 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 MUTYHQ9UIF7 546 aa24.22■■□□□ 1.47
TTC28-204ENST00000468807 C2orf71A6NGG8 1288 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 TSPAN1O60635 241 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 CXCL14O95715 111 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 PTENP60484 403 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 CAPSQ13938 189 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 ANKRD54Q6NXT1 300 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 AGMOQ6ZNB7 445 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 RNF135Q8IUD6 432 aa24.21■■□□□ 1.47
TTC28-204ENST00000468807 MRPL43Q8N983 215 aaKnown RBP24.21■■□□□ 1.47
TTC28-204ENST00000468807 POLR3FQ9H1D9 316 aaPredicted RBP24.21■■□□□ 1.47
TTC28-204ENST00000468807 FOXP1Q9H334 677 aaPredicted RBP24.21■■□□□ 1.47
TTC28-204ENST00000468807 CNTNAP2Q9UHC6 1331 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP24.2■■□□□ 1.46
TTC28-204ENST00000468807 POMCP01189 267 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 GALTP07902 379 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 OR52Z1P0C646 297 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 ITGA4P13612 1032 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 SLC11A1P49279 550 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 RBM25P49756 843 aaKnown RBP24.2■■□□□ 1.46
TTC28-204ENST00000468807 AFF1P51825 1210 aaKnown RBP24.2■■□□□ 1.46
TTC28-204ENST00000468807 TTC38Q5R3I4 469 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 NOTUMQ6P988 496 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 MRPL10Q7Z7H8 261 aaKnown RBP24.2■■□□□ 1.46
TTC28-204ENST00000468807 ZNF280BQ86YH2 543 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 FBXO18Q8NFZ0 1043 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 AUTS2Q8WXX7 1259 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 IGSF21Q96ID5 467 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 RPGRIP1Q96KN7 1286 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 KIF2CQ99661 725 aa24.2■■□□□ 1.46
TTC28-204ENST00000468807 CARNS1A5YM72 827 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 MED24O75448 989 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 GLRA2P23416 452 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 AXLP30530 894 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 ARL2P36404 184 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 CATSPER3Q86XQ3 398 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 CNNM3Q8NE01 707 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 ERMNQ8TAM6 284 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 BCL7CQ8WUZ0 217 aaPredicted RBP24.19■■□□□ 1.46
TTC28-204ENST00000468807 CASP10Q92851 521 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 APOL6Q9BWW8 343 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 PHF7Q9BWX1 381 aaPredicted RBP24.19■■□□□ 1.46
TTC28-204ENST00000468807 EIF2AQ9BY44 585 aaKnown RBP24.19■■□□□ 1.46
TTC28-204ENST00000468807 TRIM6Q9C030 488 aaPredicted RBP24.19■■□□□ 1.46
TTC28-204ENST00000468807 TUFT1Q9NNX1 390 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 HCFC2Q9Y5Z7 792 aa24.19■■□□□ 1.46
TTC28-204ENST00000468807 PRR33A8MZF0 331 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 SPATA31C1P0DKV0 1188 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 NCLP19338 710 aaKnown RBP24.18■■□□□ 1.46
TTC28-204ENST00000468807 MBTD1Q05BQ5 628 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 KCNC3Q14003 757 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 PCBP1Q15365 356 aaKnown RBP eCLIP24.18■■□□□ 1.46
TTC28-204ENST00000468807 POTEGQ6S5H5 508 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 TMEM184AQ6ZMB5 413 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 DDX53Q86TM3 631 aaKnown RBP24.18■■□□□ 1.46
TTC28-204ENST00000468807 NOSTRINQ8IVI9 506 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 ZBP1Q9H171 429 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 GPRC5CQ9NQ84 441 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 KANSL3Q9P2N6 904 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 NOL7Q9UMY1 257 aaKnown RBP24.18■■□□□ 1.46
TTC28-204ENST00000468807 HES2Q9Y543 173 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 IPPQ9Y573 584 aa24.18■■□□□ 1.46
TTC28-204ENST00000468807 LRRIQ4A6NIV6 560 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 B4GALT3O60512 393 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 CLASP2O75122 1294 aaKnown RBP24.17■■□□□ 1.46
TTC28-204ENST00000468807 DDHD2O94830 711 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 XRCC6P12956 609 aaKnown RBP eCLIP24.17■■□□□ 1.46
TTC28-204ENST00000468807 POU5F1BQ06416 359 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 CBX2Q14781 532 aaPredicted RBP24.17■■□□□ 1.46
TTC28-204ENST00000468807 SYCE2Q6PIF2 218 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 SMG8Q8ND04 991 aaKnown RBP24.17■■□□□ 1.46
TTC28-204ENST00000468807 CCDC51Q96ER9 411 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 NACC1Q96RE7 527 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 CSRNP2Q9H175 543 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 UBN1Q9NPG3 1134 aa24.17■■□□□ 1.46
TTC28-204ENST00000468807 SSBP05455 408 aaKnown RBP eCLIP24.16■■□□□ 1.46
TTC28-204ENST00000468807 CTSAP10619 480 aa24.16■■□□□ 1.46
TTC28-204ENST00000468807 MLH1P40692 756 aa24.16■■□□□ 1.46
TTC28-204ENST00000468807 ORC2Q13416 577 aaPredicted RBP24.16■■□□□ 1.46
TTC28-204ENST00000468807 NBR1Q14596 966 aa24.16■■□□□ 1.46
TTC28-204ENST00000468807 IFNLR1Q8IU57 520 aaPredicted RBP24.16■■□□□ 1.46
TTC28-204ENST00000468807 SUSD6Q92537 303 aa24.16■■□□□ 1.46
TTC28-204ENST00000468807 POLR3CQ9BUI4 534 aaPredicted RBP24.16■■□□□ 1.46
TTC28-204ENST00000468807 S1PR5Q9H228 398 aa24.16■■□□□ 1.46
TTC28-204ENST00000468807 FAN1Q9Y2M0 1017 aa24.16■■□□□ 1.46
TTC28-204ENST00000468807 LOC730098B7Z3J9 87 aa24.15■■□□□ 1.46
TTC28-204ENST00000468807 B4GALT5O43286 388 aa24.15■■□□□ 1.46
TTC28-204ENST00000468807 ALDH2P05091 517 aa24.15■■□□□ 1.46
TTC28-204ENST00000468807 HOXB8P17481 243 aaPredicted RBP24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms